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(v1.3.0.9023) optimalisation

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dr. M.S. (Matthijs) Berends
2020-09-19 11:54:01 +02:00
parent 4e40e42011
commit d049cce69b
30 changed files with 104 additions and 578 deletions
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R/zzz.R
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@ -84,8 +84,6 @@ create_MO_lookup <- function() {
# all the rest
MO_lookup[which(is.na(MO_lookup$kingdom_index)), "kingdom_index"] <- 5
MO_lookup$prevalence_kingdom_index <- MO_lookup$prevalence * MO_lookup$kingdom_index
# use this paste instead of `fullname` to work with Viridans Group Streptococci, etc.
MO_lookup$fullname_lower <- tolower(trimws(paste(MO_lookup$genus,
MO_lookup$species,