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Update contributors list

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dr. M.S. (Matthijs) Berends 2022-10-21 21:56:54 +02:00
parent bfca21bd3f
commit d0b54f640c
5 changed files with 38 additions and 33 deletions
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6
DESCRIPTION
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@ -1,5 +1,5 @@
Package: AMR
Version: 1.8.2.9030
Version: 1.8.2.9031
Date: 2022-10-21
Title: Antimicrobial Resistance Data Analysis
Description: Functions to simplify and standardise antimicrobial resistance (AMR)
@ -22,6 +22,7 @@ Authors@R: c(
person(family = "Mykhailenko", c("Dmytro"), role = "ctb"),
person(family = "Mymrikov", c("Anton"), role = "ctb"),
person(family = "Ny", c("Sofia"), role = "ctb", comment = c(ORCID = "0000-0002-2017-1363")),
person(family = "Salm", c("Jonas"), role = "ctb"),
person(family = "Schade", c("Rogier", "P."), role = "ctb"),
person(family = "Sinha", c("Bhanu", "N.", "M."), role = "ths", comment = c(ORCID = "0000-0003-1634-0010")),
person(family = "Underwood", c("Anthony"), role = "ctb", comment = c(ORCID = "0000-0002-8547-4277")))
@ -32,7 +33,8 @@ Enhances:
janitor,
skimr,
tibble,
tidyselect
tidyselect,
tsibble
Suggests:
curl,
data.table,

4
NEWS.md
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@ -1,4 +1,4 @@
# AMR 1.8.2.9030
# AMR 1.8.2.9031
This version will eventually become v2.0! We're happy to reach a new major milestone soon!
@ -49,7 +49,7 @@ This version will eventually become v2.0! We're happy to reach a new major miles
### Other
* New website to make use of the new Bootstrap 5 and pkgdown 2.0. The website now contains results for all examples and will be automatically regenerated with every change to our repository, using GitHub Actions
* Added Peter Dutey-Magni, Dmytro Mykhailenko and Anton Mymrikov as contributors, to thank them for their valuable input
* Added Peter Dutey-Magni, Dmytro Mykhailenko, Anton Mymrikov, and Jonas Salm as contributors, to thank them for their valuable input
* All R and Rmd files in this project are now styled using the `styler` package
* Set scalar conditional expressions (`&&` and `||`) where possible to comply with the upcoming R 4.3
* An enormous lot of code cleaning, fixing some small bugs on the way

3
R/rsi.R
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@ -719,8 +719,9 @@ as_rsi_method <- function(method_short,
mo.bak <- list(...)$mo.bak
} else {
mo.bak <- mo
mo <- suppressWarnings(as.mo(mo))
}
# be sure to take current taxonomy, as the rsi_translation data set only contains current taxonomy
mo <- suppressWarnings(suppressMessages(as.mo(mo, keep_synonyms = FALSE)))
guideline_coerced <- get_guideline(guideline, reference_data)
if (is.na(ab)) {
message_("Returning NAs for unknown drug: '", font_bold(ab.bak),

1
man/AMR.Rd
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@ -94,6 +94,7 @@ Other contributors:
\item Dmytro Mykhailenko [contributor]
\item Anton Mymrikov [contributor]
\item Sofia Ny (\href{https://orcid.org/0000-0002-2017-1363}{ORCID}) [contributor]
\item Jonas Salm [contributor]
\item Rogier P. Schade [contributor]
\item Bhanu N. M. Sinha (\href{https://orcid.org/0000-0003-1634-0010}{ORCID}) [thesis advisor]
\item Anthony Underwood (\href{https://orcid.org/0000-0002-8547-4277}{ORCID}) [contributor]

15
pkgdown/extra.js
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@ -31,8 +31,9 @@
$(document).ready(function() {
// Replace 'Developers' with 'Maintainers' on the main page
// Replace 'Developers' with 'Maintainers' on the main page, and "Contributors" on the Authors page
$(".developers h2").text("Maintainers");
$(".citation h2").text("Contributors");
// replace \donttest and \dontrun texts in Examples
if ($("#ref-examples ~ div pre").length > 0) {
@ -52,18 +53,18 @@ $(document).ready(function() {
if (typeof(x) != "undefined") {
x = x.replace(/Author, maintainer/g, "Principle developer");
x = x.replace(/Author, contributor/g, "Contributing maintainer");
x = x.replace(/Author, thesis advisor/g, "Doctoral advisor");
x = x.replace(/Thesis advisor/g, "Doctoral advisor");
// authors
x = x.replace("Alex", "Prof. Dr. Alex");
x = x.replace(/Thesis advisor/g, "(former) Doctoral advisor");
// contributors
x = x.replace("Alex", "Prof. Alex");
x = x.replace("Anthony", "Dr. Anthony");
x = x.replace("Bart", "Dr. Bart");
x = x.replace("Bhanu", "Prof. Dr. Bhanu");
x = x.replace("Casper", "Prof. Dr. Casper");
x = x.replace("Bhanu", "Prof. Bhanu");
x = x.replace("Casper", "Prof. Casper");
x = x.replace("Christian", "Dr. Christian");
x = x.replace("Corinna", "Dr. Corinna");
x = x.replace("Dennis", "Dr. Dennis");
x = x.replace("Gwen", "Dr. Gwen");
x = x.replace("Jonas", "Dr. Jonas");
x = x.replace("Judith", "Dr. Judith");
x = x.replace("Matthijs", "Dr. Matthijs");
x = x.replace("Peter", "Dr. Peter");