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2026-04-02 09:54:05 +00:00
parent d6c59896e9
commit d0fd6aa2cc
103 changed files with 293 additions and 265 deletions
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8
reference/antimicrobial_selectors.md
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@@ -170,7 +170,7 @@ not_intrinsic_resistant(only_sir_columns = FALSE, col_mo = NULL,
- version_expected_phenotypes:
The version number to use for the EUCAST Expected Phenotypes. Can be
"1.2".
.val 1.2.
## Value
@@ -887,7 +887,8 @@ subset(example_isolates, any(carbapenems() == "R"))
# filter on any or all results in the carbapenem columns (i.e., IPM, MEM):
example_isolates[any(carbapenems()), ]
#> ℹ For `carbapenems()` using columns IPM (imipenem) and MEM (meropenem)
#> ℹ Filtering any of columns 'IPM' and 'MEM' to contain value "S", "I" or "R"
#> ℹ Filtering any of columns IPM and MEM to only contain values "S", "SDD", "I",
#> "R", "NI", "WT", "NWT", or "NS"
#> # A tibble: 962 × 46
#> date patient age gender ward mo PEN OXA FLC AMX
#> <date> <chr> <dbl> <chr> <chr> <mo> <sir> <sir> <sir> <sir>
@@ -910,7 +911,8 @@ example_isolates[any(carbapenems()), ]
#> # IPM <sir>, MEM <sir>, MTR <sir>, CHL <sir>, COL <sir>, MUP <sir>, …
example_isolates[all(carbapenems()), ]
#> ℹ For `carbapenems()` using columns IPM (imipenem) and MEM (meropenem)
#> ℹ Filtering all of columns 'IPM' and 'MEM' to contain value "S", "I" or "R"
#> ℹ Filtering all of columns IPM and MEM to only contain values "S", "SDD", "I",
#> "R", "NI", "WT", "NWT", or "NS"
#> # A tibble: 756 × 46
#> date patient age gender ward mo PEN OXA FLC AMX
#> <date> <chr> <dbl> <chr> <chr> <mo> <sir> <sir> <sir> <sir>