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reference/as.sir.md
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@@ -280,9 +280,9 @@ disk diffusion diameters:
- breakpoint_type:
The type of breakpoints to use, either "ECOFF", "animal", or "human".
ECOFF stands for Epidemiological Cut-Off values. The default is
`"human"`, which can also be set with the package option
The type of breakpoints to use, either .val ECOFF, .val animal, or
.val human. ECOFF stands for Epidemiological Cut-Off values. The
default is `"human"`, which can also be set with the package option
[`AMR_breakpoint_type`](https://amr-for-r.org/reference/AMR-options.md).
If `host` is set to values of veterinary species, this will
automatically be set to `"animal"`.
@@ -660,10 +660,10 @@ sir_interpretation_history()
#> # A tibble: 4 × 18
#> datetime index method ab_given mo_given host_given input_given
#> <dttm> <int> <chr> <chr> <chr> <chr> <chr>
#> 1 2026-03-30 08:14:10 1 MIC amoxicillin Escherich… human 8
#> 2 2026-03-30 08:14:10 1 MIC cipro Escherich… human 0.256
#> 3 2026-03-30 08:14:10 1 DISK tobra Escherich… human 16
#> 4 2026-03-30 08:14:11 1 DISK genta Escherich… human 18
#> 1 2026-04-02 09:50:07 1 MIC amoxicillin Escherich… human 8
#> 2 2026-04-02 09:50:08 1 MIC cipro Escherich… human 0.256
#> 3 2026-04-02 09:50:08 1 DISK tobra Escherich… human 16
#> 4 2026-04-02 09:50:08 1 DISK genta Escherich… human 18
#> # ℹ 11 more variables: ab <ab>, mo <mo>, host <chr>, input <chr>,
#> # outcome <sir>, notes <chr>, guideline <chr>, ref_table <chr>, uti <lgl>,
#> # breakpoint_S_R <chr>, site <chr>