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2026-04-02 09:54:05 +00:00
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reference/plot.md
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@@ -199,9 +199,9 @@ labels_sir_count(position = NULL, x = "antibiotic",
- breakpoint_type:
The type of breakpoints to use, either "ECOFF", "animal", or "human".
ECOFF stands for Epidemiological Cut-Off values. The default is
`"human"`, which can also be set with the package option
The type of breakpoints to use, either .val ECOFF, .val animal, or
.val human. ECOFF stands for Epidemiological Cut-Off values. The
default is `"human"`, which can also be set with the package option
[`AMR_breakpoint_type`](https://amr-for-r.org/reference/AMR-options.md).
If `host` is set to values of veterinary species, this will
automatically be set to `"animal"`.
@@ -493,6 +493,8 @@ plot(some_mic_values)
# when providing the microorganism and antibiotic, colours will show interpretations:
plot(some_mic_values, mo = "S. aureus", ab = "ampicillin")
#> ℹ No EUCAST 2026 MIC interpretations found for ampicillin in Staphylococcus
#> aureus
plot(some_disk_values)