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@ -38,7 +38,7 @@
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@ -375,19 +375,19 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co"># 1 I S S S I S</span></span>
<span><span class="co"># 2 R R I S R I</span></span>
<span><span class="co"># 3 S I R I S I</span></span>
<span><span class="co"># 4 R I R S S I</span></span>
<span><span class="co"># 5 I S R R R S</span></span>
<span><span class="co"># 6 S R S S S S</span></span>
<span><span class="co"># 1 R I I I R I</span></span>
<span><span class="co"># 2 I R I I R S</span></span>
<span><span class="co"># 3 R S I S S I</span></span>
<span><span class="co"># 4 S R S R I I</span></span>
<span><span class="co"># 5 S R R R I I</span></span>
<span><span class="co"># 6 R I S S S R</span></span>
<span><span class="co"># kanamycin</span></span>
<span><span class="co"># 1 S</span></span>
<span><span class="co"># 2 R</span></span>
<span><span class="co"># 3 R</span></span>
<span><span class="co"># 4 S</span></span>
<span><span class="co"># 1 I</span></span>
<span><span class="co"># 2 I</span></span>
<span><span class="co"># 3 S</span></span>
<span><span class="co"># 4 I</span></span>
<span><span class="co"># 5 I</span></span>
<span><span class="co"># 6 R</span></span></code></pre></div>
<span><span class="co"># 6 I</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -428,40 +428,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3209</td>
<td align="right">64.18%</td>
<td align="right">3209</td>
<td align="right">64.18%</td>
<td align="right">3201</td>
<td align="right">64.02%</td>
<td align="right">3201</td>
<td align="right">64.02%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">1005</td>
<td align="right">20.10%</td>
<td align="right">4214</td>
<td align="right">84.28%</td>
<td align="right">981</td>
<td align="right">19.62%</td>
<td align="right">4182</td>
<td align="right">83.64%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">417</td>
<td align="right">8.34%</td>
<td align="right">4631</td>
<td align="right">92.62%</td>
<td align="right">441</td>
<td align="right">8.82%</td>
<td align="right">4623</td>
<td align="right">92.46%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">265</td>
<td align="right">5.30%</td>
<td align="right">4896</td>
<td align="right">97.92%</td>
<td align="right">258</td>
<td align="right">5.16%</td>
<td align="right">4881</td>
<td align="right">97.62%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">104</td>
<td align="right">2.08%</td>
<td align="right">119</td>
<td align="right">2.38%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>