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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9094</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9095</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -183,44 +183,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 2 32 0.001 2 0.005 >=256 64 16 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 8 0.0625 0.005 0.5 >=256 128 32 0.005 0.001 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 16 0.025 8 8 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 0.125 64 0.025 4 32 0.5 0.5 1 0.001 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.005 0.001 16 2 0.0625 1 0.005 0.001 0.002 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.125 0.001 0.25 256 0.25 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 50 6 29 7 10 23 32 46 48 21 42 49 17 8 11 35 19 19 27 33 49 49 28 24 28</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 22 17 48 24 33 35 46 9 46 34 48 48 30 42 8 44 15 41 34 27 42 47 19 32 29</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'rsi'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S S I I S S R I S R R R I R I R S I R R S R S I S</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S S R S R S R S I R I I R S R S S I R I S I S S S</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 0.01 0.0625 >=64 32 0.5 8 <=0.001 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.01 0.125 1 0.005 16 0.01 4 2 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.01 0.002 0.025 0.125 <=0.001 >=64 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 8 0.25 0.01 4 0.5 0.005 0.01 256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 16 2 0.0625 0.5 0.002 0.125 32 32 0.002 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] <=0.001 4 0.005 0.002 <=0.001 256 0.125 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 8 <=0.5 <=0.5 8 <=0.5 >=32 4 4 2 1 <=0.5</span>
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<span class="r-out co"><span class="r-pr">#></span> [13] <=0.5 <=0.5 1 16 16 8 16 <=0.5 4 1 1 <=0.5</span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 4 8 16 2 16 <=1 8 2 16 8 <=1 64 2 4 2 2 2 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [20] 64 8 8 4 32 4 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 0.25 <=0.0625 0.5 >=16 0.25 <=0.0625 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [9] 8 1 <=0.0625 >=16 4 2 <=0.0625 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [17] 0.25 1 2 8 1 0.25 2 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 0.025 0.0625 >=4 0.5 0.5 0.5 0.5 >=4 >=4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.25 0.025 0.025 0.125 >=4 1 >=4 1 1 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 2 0.25 1 1 1 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 48 11 16 42 45 29 50 43 35 25 13 17 20 35 47 24 29 40 40 50 48 44 50 14 43</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 46 27 10 49 45 44 27 26 10 43 35 37 42 42 46 37 19 18 41 17 29 50 10 23 50</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 16 13 15 11 17 14 17 16 17 12 12 16 14 17 17 12 13 13 14 16 16 17 14 11</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 11 17 11 14 14 12 14 11 14 15 14 11 12 15 16 11 13 13 16 12 15 14 14 17 15</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 25 27 27 25 19 18 15 16 16 18 18 24 15 20 25 27 26 19 24 20 24 27 18 19 25</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 27 27 20 21 24 17 21 21 22 18 16 27 27 22 19 25 25 21 15 19 27 21 18 21 17</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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