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(v1.0.1.9005) as.mo() improvements

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dr. M.S. (Matthijs) Berends
2020-04-13 21:09:56 +02:00
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commit d1cb7d3b6f
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NEWS.md
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# AMR 1.0.1.9004
## <small>Last updated: 14-Mar-2020</small>
# AMR 1.0.1.9005
## <small>Last updated: 13-Apr-2020</small>
### New
* Support for easy principal component analysis for AMR, using the new `pca()` function
* Plotting biplots for principal component analysis using the new `ggplot_pca()` function
### Changed
* Improvements for the algorithm used by `as.mo()` (and consequently all `mo_*` functions, that use `as.mo()` internally):
* Support for codes ending with `SPE` for species, like `"ESCSPE"` for *Escherichia coli*
* Support for any encoding, which means that any language-specific character with accents can be used for input
* Support for more arbitrary IDs used in laboratory information systems
* Small fix for preventing viruses being treated as bacteria
* Small fix for preventing contamination and lack of growth being treated as valid microorganisms
* Added more abbreviations to the `antibiotics` data set
### Other
* Support for the upcoming `dplyr` version 1.0.0
* More robust assigning for classes `rsi` and `mic`
# AMR 1.0.1