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(v0.8.0.9029) cleanup

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dr. M.S. (Matthijs) Berends
2019-11-10 15:50:18 +01:00
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NEWS.md
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# AMR 0.8.0.9028
# AMR 0.8.0.9029
<small>Last updated: 10-Nov-2019</small>
### New
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* The new Verbose mode (`mdro(...., verbose = TRUE)`) returns an informative data set where the reason for MDRO determination is given for every isolate, and an list of the resistant antimicrobial agents
### Changes
* Removed previously deprecated function `as.rsi()` - this function was replaced by `ab_atc()`
* Removed previously deprecated function `as.atc()` - this function was replaced by `ab_atc()`
* Renamed all `portion_*` functions to `proportion_*`. All `portion_*` functions are still available as deprecated functions, and will return a warning when used.
* When running `as.rsi()` over a data set, it will now print the guideline that will be used if it is not specified by the user
* Fix for `eucast_rules()`: *Stenotrophomonas maltophilia* not interpreted "R" to ceftazidime anymore (following EUCAST v3.1)