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(v0.8.0.9029) cleanup

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dr. M.S. (Matthijs) Berends
2019-11-10 15:50:18 +01:00
parent 54b6322056
commit d22834c5b8
37 changed files with 351 additions and 348 deletions
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4
R/mdro.R
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@ -21,7 +21,7 @@
#' Determine multidrug-resistant organisms (MDRO)
#'
#' Determine which isolates are multidrug-resistant organisms (MDRO) according to (country-specific) guidelines.
#' Determine which isolates are multidrug-resistant organisms (MDRO) according to international and national guidelines.
#' @param guideline a specific guideline to follow. When left empty, the publication by Magiorakos \emph{et al.} (2012, Clinical Microbiology and Infection) will be followed, see Details.
#' @param info print progress
#' @inheritParams eucast_rules
@ -637,7 +637,7 @@ mdro <- function(x,
which(x$genus == "Staphylococcus" & x$species == "aureus"),
c(OXA, FOX),
"any")
trans_tbl2(paste("Table 1 -", italic("S. aureus")),
trans_tbl2(paste("Table 1 -", italic("Staphylococcus aureus")),
which(x$genus == "Staphylococcus" & x$species == "aureus"),
list(GEN,
RIF,