From d2b3937a90c26b85eb6dabf13ccc9c2fd82ad364 Mon Sep 17 00:00:00 2001
From: Matthijs Berends <m.s.berends@umcg.nl>
Date: Sun, 27 Apr 2025 09:58:19 +0200
Subject: [PATCH] (v2.1.1.9257) adjust unit tests

---
 DESCRIPTION                       |  4 ++--
 NEWS.md                           |  2 +-
 tests/testthat/test-antibiogram.R |  7 +++----
 tests/testthat/test-sir.R         | 10 ++++------
 4 files changed, 10 insertions(+), 13 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 6194b806b..725712b38 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: AMR
-Version: 2.1.1.9256
-Date: 2025-04-26
+Version: 2.1.1.9257
+Date: 2025-04-27
 Title: Antimicrobial Resistance Data Analysis
 Description: Functions to simplify and standardise antimicrobial resistance (AMR)
   data analysis and to work with microbial and antimicrobial properties by
diff --git a/NEWS.md b/NEWS.md
index 963b3176c..37c276e3c 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,4 +1,4 @@
-# AMR 2.1.1.9256
+# AMR 2.1.1.9257
 
 *(this beta version will eventually become v3.0. We're happy to reach a new major milestone soon, which will be all about the new One Health support! Install this beta using [the instructions here](https://amr-for-r.org/#get-this-package).)*
 
diff --git a/tests/testthat/test-antibiogram.R b/tests/testthat/test-antibiogram.R
index 4ffee6202..03cf0b6dd 100644
--- a/tests/testthat/test-antibiogram.R
+++ b/tests/testthat/test-antibiogram.R
@@ -53,7 +53,7 @@ test_that("test-antibiogram.R", {
   expect_inherits(ab2, "antibiogram")
   expect_inherits(ab3, "antibiogram")
   expect_equal(colnames(ab1), c("Pathogen", "Amikacin", "Gentamicin", "Imipenem", "Kanamycin", "Meropenem", "Tobramycin"))
-  expect_equal(colnames(ab2), c("Pathogen (N min-max)", "J01GB01", "J01GB03", "J01GB04", "J01GB06"))
+  expect_equal(colnames(ab2), c("Pathogen", "J01GB01", "J01GB03", "J01GB04", "J01GB06"))
   expect_equal(colnames(ab3), c("Pathogen", "IPM", "MEM"))
   expect_equal(ab3$MEM, c(52, NA, 100, 100, NA))
 
@@ -96,14 +96,13 @@ test_that("test-antibiogram.R", {
     syndromic_group = ifelse(ex1$ward == "ICU",
       "IC", "Geen IC"
     ),
-    language = "nl",
-    add_total_n = TRUE
+    language = "nl"
   )
 
   expect_inherits(ab6, "antibiogram")
   expect_inherits(ab7, "antibiogram")
   expect_equal(colnames(ab6), c("Syndromic Group", "Pathogen", "AMK", "GEN", "IPM", "KAN", "MEM", "TOB"))
-  expect_equal(colnames(ab7), c("Syndroomgroep", "Pathogeen (N min-max)", "Amikacine", "Gentamicine", "Tobramycine"))
+  expect_equal(colnames(ab7), c("Syndroomgroep", "Pathogeen", "Amikacine", "Gentamicine", "Tobramycine"))
 
   # Weighted-incidence syndromic combination antibiogram (WISCA) ---------
 
diff --git a/tests/testthat/test-sir.R b/tests/testthat/test-sir.R
index 054cd938a..227222f95 100644
--- a/tests/testthat/test-sir.R
+++ b/tests/testthat/test-sir.R
@@ -325,15 +325,13 @@ test_that("test-sir.R", {
   expect_message(as.sir(data.frame(
     mo = "E. coli",
     NIT = c("<= 2", 32),
-    uti = TRUE,
-    info = TRUE
-  )))
+    uti = TRUE
+  ), info = TRUE))
   expect_message(as.sir(data.frame(
     mo = "E. coli",
     NIT = c("<= 2", 32),
-    specimen = c("urine", "blood"),
-    info = TRUE
-  )))
+    specimen = c("urine", "blood")
+  ), info = TRUE))
 
   # SDD vs I in CLSI 2024
   expect_identical(