From d2ced1db613820ee9d0a618793d55cbaa09b3622 Mon Sep 17 00:00:00 2001
From: Matthijs Berends <m.s.berends@umcg.nl>
Date: Thu, 4 Sep 2025 14:28:01 +0200
Subject: [PATCH] (v3.0.0.9024) fix todo tracker

---
 .github/workflows/todo-tracker.yml | 4 ++--
 DESCRIPTION                        | 2 +-
 NEWS.md                            | 2 +-
 _pkgdown.yml                       | 2 +-
 4 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/todo-tracker.yml b/.github/workflows/todo-tracker.yml
index eafccf76a..d36242dd8 100644
--- a/.github/workflows/todo-tracker.yml
+++ b/.github/workflows/todo-tracker.yml
@@ -47,7 +47,7 @@ jobs:
           echo "" >> todo.md
           echo "_This overview is automatically updated on each push to \`main\`. It provides an automated overview of all mentions of the text \`TODO\`._" >> todo.md
           echo "" >> todo.md
-          todos=$(find R/ -type f ! -name "sysdata.rda" -exec grep -nH "TODO" {} + || true)
+          todos=$(grep -rn --include=\*.{R,Rmd,yaml,yml,md,css,js} --exclude=todo-tracker.yml "TODO" . || true)
           if [ -z "$todos" ]; then
             echo "✅ No TODOs found." >> todo.md
           else
@@ -74,6 +74,6 @@ jobs:
         with:
           token: ${{ secrets.GH_REPO_SCOPE }}
           issue-number: 231
-          comment-id: 3379846566
+          comment-id: 3253439219
           body-file: todo.md
           edit-mode: replace
diff --git a/DESCRIPTION b/DESCRIPTION
index ac5f7fe8c..e05ce4944 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,5 +1,5 @@
 Package: AMR
-Version: 3.0.0.9023
+Version: 3.0.0.9024
 Date: 2025-09-04
 Title: Antimicrobial Resistance Data Analysis
 Description: Functions to simplify and standardise antimicrobial resistance (AMR)
diff --git a/NEWS.md b/NEWS.md
index 60e3ec397..931f9001b 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,4 +1,4 @@
-# AMR 3.0.0.9023
+# AMR 3.0.0.9024
 
 This is a bugfix release following the release of v3.0.0 in June 2025.
 
diff --git a/_pkgdown.yml b/_pkgdown.yml
index e6a9e4a2b..717555c39 100644
--- a/_pkgdown.yml
+++ b/_pkgdown.yml
@@ -234,7 +234,7 @@ reference:
     - "`antimicrobials`"
     - "`clinical_breakpoints`"
     - "`example_isolates`"
-    - "`esbl_isolates`"
+    # TODO - "`esbl_isolates`"
     - "`microorganisms.codes`"
     - "`microorganisms.groups`"
     - "`intrinsic_resistant`"