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(v0.8.0.9004) added MDR guideline by Magiorakos et al.

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dr. M.S. (Matthijs) Berends
2019-10-26 21:56:41 +02:00
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NEWS.md
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# AMR 0.8.0.9003
<small>Last updated: 23-Oct-2019</small>
# AMR 0.8.0.9004
<small>Last updated: 26-Oct-2019</small>
### New
* Support for a new MDRO guideline: Magiorakos AP, Srinivasan A *et al.* "Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance." Clinical Microbiology and Infection (2012). **This is now the new default guideline for the `mdro()` function.**
### Changes
* When running `as.rsi()` over a data set, it will now print the guideline that will be used if it is not specified by the user
* Fix for `eucast_rules()`: *Stenotrophomonas maltophilia* not interpreted "R" to ceftazidime anymore (following EUCAST v3.1)
* Fix in taxonomic info for genera that are in multiple kingdoms, like *Proteus*
* Fix for interpreting MIC values with `as.rsi()` where the input is `NA`
* Added "imi" as allowed abbreviation for Imipenem
* Fix for automatically determining columns with antibiotic results in `mdro()` and `eucast_rules()`
* Added ATC codes for ceftaroline, ceftobiprole and faropenem
# AMR 0.8.0