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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9007</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9008</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -178,42 +178,43 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.01 1 0.025 4 2 256 0.125 0.005 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 4 0.005 64 1 16 0.5 <=0.002 0.5 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.005 16 16 128 0.01 16 <=0.002</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 2 0.5 32 0.01 1 0.5 <=0.002 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.01 32 >=256 0.01 4 0.125 0.025 32 >=256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 1 1 4 0.025 4 64 0.0625 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 49 25 17 40 42 40 37 45 6 46 13 6 48 38 38 28 46 14 40 9 19 41 41 40 43</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 46 43 39 46 43 42 23 46 47 47 49 43 50 47 45 32 40 43 37 43 40 48 21 12 49</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <rsi></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S S R R R R I S I I S R I S S R I S S R S R I R S</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R S S I S R I I I R S R R R S R R S R I I I S S I</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 32 4 4 0.002 8 2 0.025 <=0.001</span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.25 128 0.002 16 32 0.125 16 0.5 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 256 16 0.0625 <=0.001 0.5 256 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 0.5 0.001 16 0.001 2 0.0625 0.0625 16 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.025 32 0.5 0.005 16 0.125 0.0625 0.125 0.002 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.01 32 8 16 0.0625</span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 >=16 >=16 >=16 >=16 2 <=1 8 8 4 8 <=1 4 <=1 <=1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] >=16 >=16 <=1 <=1 8 8 4 2 4 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 >=32 16 4 4 16 2 16 4 2 >=32 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 2 <=0.5 <=0.5 4 8 8 1 16 16 >=32 8 <=0.5</span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 2 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 0.5 0.0625 4 >=16 1 0.5 0.5 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 4 0.25 0.25 0.0625 8 4 8 0.25 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.25 4 1 >=16 <=0.025 4 <=0.025</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 >=16 2 0.25 0.125 8 0.25 >=16 1 1 8 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 8 0.5 >=16 0.25 1 0.5 >=16 1 4 0.125 8 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 8 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 21 37 33 13 16 25 34 10 46 40 48 31 42 13 33 30 9 24 15 41 20 22 43 45 42</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 28 44 33 10 35 18 23 48 50 33 44 27 41 19 40 45 44 42 18 42 38 29 47 47 48</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 13 17 15 16 16 11 16 14 15 13 12 13 13 14 14 16 13 16 14 17 13 15 11 17 14</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 12 17 15 17 14 16 17 13 14 16 16 16 12 13 12 12 14 12 16 17 17 12 15 13 14</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 18 20 17 22 27 15 22 15 18 25 20 19 22 19 15 23 15 19 27 17 23 15 16 15 21</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 24 22 25 27 24 26 18 22 17 20 24 18 17 20 23 26 15 22 22 21 19 17 16 17 16</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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