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@@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9045</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9046</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@@ -178,42 +178,41 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 8 2 0.125 2 0.025 0.025 0.005 0.002 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] <=0.001 4 0.025 0.005 0.01 2 0.025 2 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.25 >=256 0.125 0.002 0.002 64 >=256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 256 2 0.0625 64 0.125 8 16 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 8 0.5 16 32 16 256 0.002 0.0625 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 256 0.25 128 8 <=0.001 0.002 0.25 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 46 42 10 43 25 9 15 8 50 21 42 19 29 7 35 49 39 32 44 20 34 29 43 12 49</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 6 11 46 8 26 50 29 30 34 45 32 30 23 47 15 48 45 48 46 48 35 44 29 17 16</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'rsi'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R R R I S R R S R S R R R S R S I I S S S I I I R</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R R S S I I R R R I S I R R R I I I R R I R R S I</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.005 0.002 128 0.25 0.025 32 4 0.125 >=256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 8 <=0.001 <=0.001 0.002 32 0.5 16 0.005 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 4 0.01 16 128 8 >=256 <=0.001</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 <=0.001 1 0.025 >=64 0.025 1 0.002 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 1 2 0.025 0.5 0.5 0.002 0.002 0.002 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.002 >=64 16 8 >=64 <=0.001 4 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 4 16 1 2 4 0.25 1 16 2 16 2 0.5 1 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 16 0.25 0.5 16 0.5 1 8 8 0.5 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 8 1 4 1 16 32 1 4 2 2 32 1 8 2 32 4 1 1 8 4 2 2 4 4 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 <=0.025 0.0625 0.125 0.0625 2 <=0.025 1 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.125 <=0.025 0.25 <=0.025 0.25 <=0.025 4 2 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.25 0.125 0.25 2 0.0625 8 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 0.25 1 >=4 1 1 <=0.125 0.5 <=0.125</span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.5 0.25 >=4 <=0.125 2 1 >=4 <=0.125 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 2 0.5 1 >=4 1 0.25 1 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 27 18 14 44 20 49 14 31 33 50 49 36 46 41 48 10 38 45 48 46 22 18 39 46 47</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 15 47 40 50 46 48 50 49 50 41 41 14 25 47 42 44 41 17 47 8 46 17 42 50</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 12 17 14 13 17 12 17 11 16 15 12 14 15 11 15 12 14 13 13 14 11 11 17 17 11</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 12 13 13 12 12 14 15 11 13 11 17 13 17 11 14 15 14 17 16 14 16 15 15 12</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 27 15 16 19 26 27 16 26 19 22 24 24 20 24 25 23 22 23 17 24 24 26 23 25</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 18 25 19 26 18 21 15 23 21 15 17 16 16 17 27 26 18 27 15 23 19 26 15 21 15</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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