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@ -38,7 +38,7 @@
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@ -375,19 +375,19 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co"># 1 S S R S S S</span></span>
<span><span class="co"># 2 R I S S R I</span></span>
<span><span class="co"># 3 S S R S S R</span></span>
<span><span class="co"># 4 R R I S S I</span></span>
<span><span class="co"># 5 I S I I I S</span></span>
<span><span class="co"># 6 R R S R I I</span></span>
<span><span class="co"># 1 I S S R I R</span></span>
<span><span class="co"># 2 R S S R R R</span></span>
<span><span class="co"># 3 R S I S S S</span></span>
<span><span class="co"># 4 I S I I R R</span></span>
<span><span class="co"># 5 I S S I S S</span></span>
<span><span class="co"># 6 S I R I R S</span></span>
<span><span class="co"># kanamycin</span></span>
<span><span class="co"># 1 I</span></span>
<span><span class="co"># 2 S</span></span>
<span><span class="co"># 3 I</span></span>
<span><span class="co"># 4 R</span></span>
<span><span class="co"># 5 S</span></span>
<span><span class="co"># 6 R</span></span></code></pre></div>
<span><span class="co"># 1 S</span></span>
<span><span class="co"># 2 R</span></span>
<span><span class="co"># 3 R</span></span>
<span><span class="co"># 4 I</span></span>
<span><span class="co"># 5 R</span></span>
<span><span class="co"># 6 I</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -428,40 +428,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3144</td>
<td align="right">62.88%</td>
<td align="right">3144</td>
<td align="right">62.88%</td>
<td align="right">3261</td>
<td align="right">65.22%</td>
<td align="right">3261</td>
<td align="right">65.22%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">1012</td>
<td align="right">20.24%</td>
<td align="right">4156</td>
<td align="right">83.12%</td>
<td align="right">959</td>
<td align="right">19.18%</td>
<td align="right">4220</td>
<td align="right">84.40%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">482</td>
<td align="right">9.64%</td>
<td align="right">4638</td>
<td align="right">92.76%</td>
<td align="right">434</td>
<td align="right">8.68%</td>
<td align="right">4654</td>
<td align="right">93.08%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">261</td>
<td align="right">5.22%</td>
<td align="right">4899</td>
<td align="right">97.98%</td>
<td align="right">243</td>
<td align="right">4.86%</td>
<td align="right">4897</td>
<td align="right">97.94%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">101</td>
<td align="right">2.02%</td>
<td align="right">103</td>
<td align="right">2.06%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>