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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9076</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9078</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -183,43 +183,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.005 1 0.001 0.025 64 1 16 8 8 64 0.002 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 8 32 0.001 1 16 0.025 0.125 0.125 2 1 0.025 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.025 64 0.005 0.0625 32 0.001 0.5 0.002 4 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.5 0.5 1 0.25 4 8 16 128 128 >=256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.025 0.025 2 0.25 128 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 37 44 22 48 24 19 46 27 48 14 15 42 48 37 44 10 45 14 38 37 42 16 50 45 46</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 41 19 42 25 27 35 32 49 6 50 36 32 43 44 36 43 11 41 38 25 44 25 47 29 45</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'rsi'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I R I S R I I S I S R R S S S R R R I R I S S I R</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R I R I S S S I I I I R S S S S R S S R R R I R R</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 0.01 32 0.125 <=0.001 64 0.025 0.125 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 8 1 0.25 8 0.25 1 1 16 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.25 0.0625 0.025 0.025 0.5 0.025 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 0.0625 0.5 0.25 0.002 0.001 0.125 0.25 1 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.125 0.005 16 16 0.0625 0.125 32 2 8 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.25 0.25 0.01 0.0625 16 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 1 1 8 8 4 >=16 4 4 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 8 <=0.25 2 4 >=16 <=0.25 0.5 2 1 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 1 2 0.5 4 >=16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 <=1 4 4 2 8 8 2 8 4 2 4 8 2 4 <=1 4 16 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [20] 32 4 2 2 <=1 16 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 0.25 2 0.125 2 2 2 4 0.25 2 1 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 4 8 2 8 0.5 1 8 4 4 0.25 2 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] >=16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 1 >=8 0.5 0.5 0.25 >=8 4 4 0.125 0.125 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] >=8 >=8 1 1 1 1 >=8 1 0.5 >=8 0.125 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.5 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 46 29 42 21 45 46 44 26 15 19 40 14 38 48 19 49 46 13 21 44 21 36 13 41 42</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 25 22 41 22 49 44 48 36 14 33 41 48 11 11 12 39 14 47 18 16 28 38 16 26 47</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 13 11 11 12 15 14 13 15 11 15 17 16 13 13 13 11 11 16 17 15 17 16 13 14</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 12 17 11 12 11 11 13 13 12 16 12 11 16 14 13 13 16 14 14 14 11 17 17 12</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 25 23 16 16 27 17 27 17 23 22 26 19 21 17 18 20 17 18 21 19 23 23 27 18 23</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 27 20 26 18 19 16 23 18 26 20 16 15 16 20 17 19 16 23 16 22 15 20 18 27 23</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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