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fix sorting of MICs, MIC autoplot titles

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dr. M.S. (Matthijs) Berends
2024-05-30 15:50:17 +02:00
parent c3ce1b551d
commit d4490c7f25
7 changed files with 18 additions and 8 deletions
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NEWS.md
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@ -1,4 +1,4 @@
# AMR 2.1.1.9033
# AMR 2.1.1.9034
*(this beta version will eventually become v3.0. We're happy to reach a new major milestone soon, which will be all about the new One Health support!)*
@ -26,6 +26,7 @@ This package now supports not only tools for AMR data analysis in clinical setti
* Added as valid levels: 4096, 6 powers of 0.0625, and 5 powers of 192 (192, 384, 576, 768, 960)
* Added new argument `keep_operators` to `as.mic()`. This can be `"all"` (default), `"none"`, or `"edges"`. This argument is also available in the new `rescale_mic()` and `scale_*_mic()` functions.
* Comparisons of MIC values are now more strict. For example, `>32` is higher than (and never equal to) `32`. Thus, `as.mic(">32") == as.mic(32)` now returns `FALSE`, and `as.mic(">32") > as.mic(32)` now returns `TRUE`.
* Sorting of MIC values (using `sort()`) was fixed in the same manner; `<0.001` now gets sorted before `0.001`, and `>0.001` gets sorted after `0.001`.
* Updated `italicise_taxonomy()` to support HTML output
* `mo_info()` now contains an extra element `group_members`, with the contents of the new `mo_group_members()` function
* Greatly improved `vctrs` integration, a Tidyverse package working in the background for many Tidyverse functions. For users, this means that functions such as `dplyr`'s `bind_rows()`, `rowwise()` and `c_across()` are now supported for e.g. columns of class `mic`. Despite this, this `AMR` package is still zero-dependent on any other package, including `dplyr` and `vctrs`.