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2026-03-24 12:34:17 +00:00
parent 330f1a9dfe
commit d55d073ae9
109 changed files with 762 additions and 777 deletions
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reference/mo_property.md
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@@ -485,7 +485,7 @@ mo_mycobank("Candida albicans")
mo_mycobank("Candida krusei")
#> [1] "337013"
mo_mycobank("Candida krusei", keep_synonyms = TRUE)
#> Warning: `?as.mo()` returned one outdated taxonomic name. Use `keep_synonyms = FALSE` to
#> Warning: `as.mo()` returned one outdated taxonomic name. Use `keep_synonyms = FALSE` to
#> clean the input to currently accepted taxonomic names, or set the R option
#> `AMR_keep_synonyms` to `FALSE`. This warning will be shown once per session.
#> [1] "268707"
@@ -579,8 +579,8 @@ if (require("dplyr")) {
filter(mo_is_gram_positive()) %>%
count(mo_genus(), sort = TRUE)
}
#> ℹ Using column 'mo' as input for `?mo_is_gram_positive()`
#> ℹ Using column 'mo' as input for `?mo_genus()`
#> ℹ Using column mo as input for `mo_is_gram_positive()`
#> ℹ Using column mo as input for `mo_genus()`
#> # A tibble: 18 × 2
#> `mo_genus()` n
#> <chr> <int>
@@ -607,8 +607,8 @@ if (require("dplyr")) {
filter(mo_is_intrinsic_resistant(ab = "vanco")) %>%
count(mo_genus(), sort = TRUE)
}
#> ℹ Using column 'mo' as input for `?mo_is_intrinsic_resistant()`
#> ℹ Using column 'mo' as input for `?mo_genus()`
#> ℹ Using column mo as input for `mo_is_intrinsic_resistant()`
#> ℹ Using column mo as input for `mo_genus()`
#> # A tibble: 19 × 2
#> `mo_genus()` n
#> <chr> <int>