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parameter combine_IR

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dr. M.S. (Matthijs) Berends
2018-10-16 09:59:31 +02:00
parent 5b5b95a47b
commit d5a41de711
10 changed files with 110 additions and 48 deletions
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NEWS.md
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@ -4,6 +4,7 @@
* Function `count_all` to get all available isolates (that like all `portion_*` and `count_*` functions also supports `summarise` and `group_by`), the old `n_rsi` is now an alias of `count_all`
#### Changed
* Added parameter `combine_IR` (TRUE/FALSE) to functions `portion_df` and `count_df`, to indicate that all values of I and R must be merged into one, so the output only consists of S vs. IR (susceptible vs. non-susceptible)
* Fix for `portion_*(..., as_percent = TRUE)` when minimal amount of isolates would not be met
* Using `portion_*` functions now throws a warning when total available isolate is below parameter `minimum`
* `as.mo` will not set package name as attribute anymore
@ -18,6 +19,7 @@
* `"MSSA"` -> *Staphylococcus aureus*
* `"MSSE"` -> *Staphylococcus epidermidis*
* Fix for `join` functions
* In `g.test`, when `sum(x)` is below 1000, suggest Fisher's Exact Test
#### Other
* Updated vignettes to comply with README