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@ -38,7 +38,7 @@
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@ -385,19 +385,19 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co"># 1 I I S R I S</span></span>
<span><span class="co"># 2 S S I I R S</span></span>
<span><span class="co"># 3 I S R S R R</span></span>
<span><span class="co"># 4 I R S I S I</span></span>
<span><span class="co"># 5 R S S R I I</span></span>
<span><span class="co"># 6 R I I I S R</span></span>
<span><span class="co"># 1 I I S I S I</span></span>
<span><span class="co"># 2 I I R R R I</span></span>
<span><span class="co"># 3 R R S S I R</span></span>
<span><span class="co"># 4 S S I R S S</span></span>
<span><span class="co"># 5 R R R S R I</span></span>
<span><span class="co"># 6 I S S I I R</span></span>
<span><span class="co"># kanamycin</span></span>
<span><span class="co"># 1 I</span></span>
<span><span class="co"># 2 S</span></span>
<span><span class="co"># 1 R</span></span>
<span><span class="co"># 2 R</span></span>
<span><span class="co"># 3 I</span></span>
<span><span class="co"># 4 S</span></span>
<span><span class="co"># 5 R</span></span>
<span><span class="co"># 6 I</span></span></code></pre></div>
<span><span class="co"># 5 I</span></span>
<span><span class="co"># 6 R</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -438,40 +438,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3218</td>
<td align="right">64.36%</td>
<td align="right">3218</td>
<td align="right">64.36%</td>
<td align="right">3187</td>
<td align="right">63.74%</td>
<td align="right">3187</td>
<td align="right">63.74%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">998</td>
<td align="right">19.96%</td>
<td align="right">4216</td>
<td align="right">84.32%</td>
<td align="right">996</td>
<td align="right">19.92%</td>
<td align="right">4183</td>
<td align="right">83.66%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">447</td>
<td align="right">8.94%</td>
<td align="right">4663</td>
<td align="right">93.26%</td>
<td align="right">449</td>
<td align="right">8.98%</td>
<td align="right">4632</td>
<td align="right">92.64%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">222</td>
<td align="right">4.44%</td>
<td align="right">4885</td>
<td align="right">97.70%</td>
<td align="right">271</td>
<td align="right">5.42%</td>
<td align="right">4903</td>
<td align="right">98.06%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">115</td>
<td align="right">2.30%</td>
<td align="right">97</td>
<td align="right">1.94%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>