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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9124</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9125</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -193,42 +193,43 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.01 0.002 4 0.125 0.25 0.25 4 1 1 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 1 64 2 0.005 0.005 0.25 0.002 0.005 0.25 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 1 256 64 0.005 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.002 256 256 1 4 32 0.002 256 0.5 0.001 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 2 0.5 0.002 0.25 64 0.001 8 1 0.025 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.0625 4 0.025 8 0.5 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 20 44 20 18 7 41 37 11 47 40 41 49 38 12 34 33 20 22 32 27 35 48 48 24 40</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 45 39 38 39 45 40 12 49 22 43 44 20 18 8 50 40 49 22 15 22 38 45 12 49 41</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R I I R S I R R R S I S I I I S R S R S I S R R S</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R R S I I S R R I I R S I S I I I I I I S I S R I</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=32 0.002 0.25 0.001 4 1 0.25 0.005 0.025 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.5 16 0.25 0.001 4 0.025 0.0625 0.5 8 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 1 0.002 8 0.5 0.001 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 0.01 0.0625 0.005 <=0.001 1 <=0.001 1 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.5 0.5 2 16 16 8 0.0625 32 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] <=0.001 4 0.002 0.25 0.005 0.0625 0.025 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 >=32 8 >=32 16 >=32 16 4 1 2 16 1 1 >=32 >=32</span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 16 >=32 1 >=32 >=32 8 1 16 4 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 0.25 >=32 0.25 1 4 1 16 8 8 8 0.25 1 0.25 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 2 2 4 8 >=32 0.25 >=32 >=32 >=32 0.5 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=0.125 8 <=0.125 2 1 1 0.25 1 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] <=0.125 2 2 1 0.25 1 4 1 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] <=0.125 0.5 <=0.125 2 0.25 2 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 2 1 0.5 0.25 0.125 0.5 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [9] 1 0.5 1 0.5 1 1 2 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [17] 0.125 0.25 0.125 0.5 0.5 0.25 <=0.0625 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 2 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 49 18 23 28 48 32 8 40 13 41 15 47 24 10 42 41 33 33 23 49 49 30 22 49 48</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 38 43 19 13 42 30 49 18 45 41 11 27 48 9 34 45 49 48 10 11 43 11 46 47 47</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 14 13 17 14 11 13 17 16 16 12 13 13 17 14 16 15 14 17 15 12 15 12 13 11</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 12 15 16 17 11 12 15 14 14 16 15 14 15 15 14 14 12 11 12 17 14 16 12 14 14</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 21 25 26 18 15 19 26 18 26 20 21 23 23 27 26 26 18 27 27 22 26 16 25 15 19</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 18 27 20 17 17 16 23 17 15 20 25 16 16 21 26 18 22 20 24 18 26 21 20 19 18</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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