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mirror of https://github.com/msberends/AMR.git synced 2024-12-25 16:46:11 +01:00

disk documentation fix

This commit is contained in:
dr. M.S. (Matthijs) Berends 2022-08-21 16:52:09 +02:00
parent 952d16de33
commit d6676e9443
7 changed files with 15 additions and 14 deletions

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@ -23,14 +23,15 @@
^data-raw$
^\.lintr$
^tests/testthat/_snaps$
^vignettes/AMR.Rmd$
^vignettes/benchmarks.Rmd$
^vignettes/datasets.Rmd$
^vignettes/EUCAST.Rmd$
^vignettes/MDR.Rmd$
^vignettes/PCA.Rmd$
^vignettes/resistance_predict.Rmd$
^vignettes/SPSS.Rmd$
^vignettes/WHONET.Rmd$
^vignettes/AMR\.Rmd$
^vignettes/benchmarks\.Rmd$
^vignettes/*\.not$
^vignettes/datasets\.Rmd$
^vignettes/EUCAST\.Rmd$
^vignettes/MDR\.Rmd$
^vignettes/PCA\.Rmd$
^vignettes/resistance_predict\.Rmd$
^vignettes/SPSS\.Rmd$
^vignettes/WHONET\.Rmd$
^logo.svg$
^CRAN-SUBMISSION$

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@ -1,5 +1,5 @@
Package: AMR
Version: 1.8.1.9019
Version: 1.8.1.9020
Date: 2022-08-21
Title: Antimicrobial Resistance Data Analysis
Description: Functions to simplify and standardise antimicrobial resistance (AMR)

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@ -1,4 +1,4 @@
# AMR 1.8.1.9019
# AMR 1.8.1.9020
### New
* EUCAST 2022 and CLSI 2022 guidelines have been added for `as.rsi()`. EUCAST 2022 is now the new default guideline for all MIC and disks diffusion interpretations.

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@ -44,7 +44,7 @@
#' df[, 2:5] <- lapply(df[, 2:5], as.disk)
#' str(df)
#'
#' #' \donttest{
#' \donttest{
#' # transforming is easier with dplyr:
#' if (require("dplyr")) {
#' df %>% mutate(across(AMP:TOB, as.disk))

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@ -43,7 +43,7 @@ df <- data.frame(microorganism = "Escherichia coli",
df[, 2:5] <- lapply(df[, 2:5], as.disk)
str(df)
#' \donttest{
\donttest{
# transforming is easier with dplyr:
if (require("dplyr")) {
df \%>\% mutate(across(AMP:TOB, as.disk))

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@ -1,6 +1,6 @@
---
title: "How to conduct AMR data analysis"
author: "Dr Matthijs Berends"
author: "Dr. Matthijs Berends"
date: '`r format(Sys.Date(), "%d %B %Y")`'
output:
rmarkdown::html_vignette: