From d6a21b332ae9ad1a490c5f103cc93fdce37e047a Mon Sep 17 00:00:00 2001 From: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Date: Fri, 10 Feb 2023 15:26:36 +0000 Subject: [PATCH] Built site for AMR: 1.8.2.9114@bc434db --- 404.html | 2 +- AMR_intro.png | Bin 100007 -> 147667 bytes AMR_intro.svg | 6096 ++++++++++++++++- LICENSE-text.html | 2 +- articles/AMR.html | 623 +- .../AMR_files/figure-html/disk_plots-1.png | Bin 38153 -> 38670 bytes .../figure-html/disk_plots_mo_ab-1.png | Bin 52667 -> 56586 bytes .../AMR_files/figure-html/mic_plots-1.png | Bin 27721 -> 28703 bytes .../AMR_files/figure-html/mic_plots-2.png | Bin 38246 -> 37405 bytes .../figure-html/mic_plots_mo_ab-1.png | Bin 38423 -> 37357 bytes .../figure-html/mic_plots_mo_ab-2.png | Bin 49732 -> 50064 bytes articles/AMR_files/figure-html/plot 1-1.png | Bin 41855 -> 41836 bytes articles/AMR_files/figure-html/plot 3-1.png | Bin 28452 -> 28495 bytes articles/AMR_files/figure-html/plot 4-1.png | Bin 78250 -> 78258 bytes articles/AMR_files/figure-html/plot 5-1.png | Bin 49880 -> 49927 bytes articles/EUCAST.html | 2 +- articles/MDR.html | 60 +- articles/PCA.html | 2 +- articles/SPSS.html | 6 +- articles/WHONET.html | 2 +- articles/datasets.html | 24 +- articles/index.html | 2 +- articles/resistance_predict.html | 2 +- articles/welcome_to_AMR.html | 4 +- authors.html | 6 +- index.html | 3 +- news/index.html | 27 +- pkgdown.yml | 2 +- reference/AMR-deprecated.html | 2 +- reference/AMR-options.html | 2 +- reference/AMR.html | 9 +- reference/Rplot003.png | Bin 17234 -> 17281 bytes reference/Rplot005.png | Bin 13155 -> 13185 bytes reference/Rplot006.png | Bin 12803 -> 12827 bytes reference/Rplot007.png | Bin 12958 -> 14596 bytes reference/Rplot008.png | Bin 20032 -> 20041 bytes reference/Rplot009.png | Bin 8486 -> 8595 bytes reference/WHOCC.html | 2 +- reference/WHONET.html | 2 +- reference/ab_from_text.html | 2 +- reference/ab_property.html | 5 +- reference/add_custom_antimicrobials.html | 2 +- reference/add_custom_microorganisms.html | 2 +- reference/age.html | 22 +- reference/age_groups-1.png | Bin 46723 -> 46724 bytes reference/age_groups.html | 2 +- reference/antibiogram-1.png | Bin 23600 -> 24603 bytes reference/antibiogram-2.png | Bin 25211 -> 26492 bytes reference/antibiogram-3.png | Bin 32297 -> 32347 bytes reference/antibiogram-4.png | Bin 36896 -> 39648 bytes reference/antibiogram.html | 86 +- reference/antibiotic_class_selectors.html | 8 +- reference/antibiotics.html | 2 +- reference/as.ab.html | 2 +- reference/as.av.html | 2 +- reference/as.disk.html | 2 +- reference/as.mic.html | 2 +- reference/as.mo.html | 2 +- reference/as.sir.html | 22 +- reference/atc_online.html | 2 +- reference/av_from_text.html | 2 +- reference/av_property.html | 2 +- reference/availability.html | 2 +- reference/bug_drug_combinations.html | 23 +- reference/clinical_breakpoints.html | 2 +- reference/count.html | 2 +- reference/custom_eucast_rules.html | 2 +- reference/dosage.html | 2 +- reference/eucast_rules.html | 2 +- reference/example_isolates.html | 2 +- reference/example_isolates_unclean.html | 2 +- reference/first_isolate.html | 131 +- reference/g.test.html | 2 +- reference/get_episode.html | 123 +- reference/ggplot_pca.html | 2 +- reference/ggplot_sir-8.png | Bin 39038 -> 37574 bytes reference/ggplot_sir.html | 6 +- reference/guess_ab_col.html | 2 +- reference/index.html | 2 +- reference/intrinsic_resistant.html | 2 +- reference/italicise_taxonomy.html | 2 +- reference/join.html | 2 +- reference/key_antimicrobials.html | 4 +- reference/kurtosis.html | 6 +- reference/like.html | 2 +- reference/mdro.html | 2 +- reference/mean_amr_distance.html | 73 +- reference/microorganisms.codes.html | 2 +- reference/microorganisms.html | 14 +- reference/mo_matching_score.html | 2 +- reference/mo_property.html | 4 +- reference/mo_source.html | 2 +- reference/pca.html | 2 +- reference/plot-1.png | Bin 26667 -> 25814 bytes reference/plot-2.png | Bin 27062 -> 27052 bytes reference/plot-3.png | Bin 28327 -> 27745 bytes reference/plot-4.png | Bin 38475 -> 37652 bytes reference/plot-5.png | Bin 38693 -> 38705 bytes reference/plot-6.png | Bin 37896 -> 37908 bytes reference/plot-7.png | Bin 37605 -> 38762 bytes reference/plot-8.png | Bin 58474 -> 58540 bytes reference/plot-9.png | Bin 26197 -> 26437 bytes reference/plot.html | 2 +- reference/proportion.html | 3 +- reference/random.html | 33 +- reference/resistance_predict-3.png | Bin 46953 -> 47085 bytes reference/resistance_predict.html | 14 +- reference/skewness.html | 4 +- reference/translate.html | 2 +- search.json | 2 +- 110 files changed, 6853 insertions(+), 684 deletions(-) diff --git a/404.html b/404.html index 5b2393cf..1c952b6c 100644 --- a/404.html +++ b/404.html @@ -36,7 +36,7 @@ AMR (for R) - 1.8.2.9111 + 1.8.2.9114