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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9054</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9057</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -183,42 +183,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 4 0.001 8 2 0.025 4 128 128 0.5 0.025 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.025 16 64 1 64 8 0.125 128 0.25 >=256 2 0.025</span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 4 4 128 8 4 0.0625 0.25 0.5 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 4 64 0.0625 32 0.25 0.001 0.001 0.025 0.001 >=256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 4 0.025 0.5 4 0.025 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 29 13 31 34 33 32 7 8 18 32 46 16 14 41 10 26 10 45 41 39 40 13 18 13 35</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 46 50 35 15 7 42 27 21 15 8 36 30 46 47 43 42 50 32 34 21 43 21 28 43</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'rsi'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S I R S I R S R I R S R S I I I I I R R R R S I I</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R I I S S R S I S R R S I S S I R I R I S S S S R</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 128 0.025 0.125 1 64 0.5 16 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.25 0.25 0.25 0.25 0.0625 <=0.001 0.005 0.25 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.0625 0.025 <=0.001 16 2 32 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 128 32 0.025 0.25 0.125 0.01 <=0.001 1 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 1 0.005 0.025 0.0625 128 0.5 0.005 0.0625 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] <=0.001 128 4 0.5 0.002 0.25 0.01 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 1 8 2 2 16 8 8 16 0.5 4 8 4 8 0.5 2 16 0.5 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [20] 8 0.5 16 2 8 0.5</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 8 8 0.5 0.5 2 4 >=16 0.5 4 8 >=16 0.5 >=16 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] >=16 1 8 1 4 4 >=16 >=16 >=16 0.5 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 0.0625 0.125 0.25 2 0.25 0.0625 2 0.125 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.125 >=4 >=4 0.5 0.125 >=4 0.25 0.125 1 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.0625 1 >=4 0.0625 >=4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 2 0.125 0.5 0.5 0.25 2 0.125 2 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.125 0.125 4 8 0.25 0.125 4 0.5 2 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 4 0.5 1 >=16 1 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 36 40 30 8 48 50 21 28 8 12 20 34 17 20 47 46 49 25 20 47 42 36 25 47</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 11 41 18 50 12 39 48 47 25 23 19 14 14 36 46 21 46 18 17 50 26 20 33 12 44</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 12 14 14 13 14 14 17 14 14 14 12 17 13 11 14 11 13 11 14 13 11 12 16 14 14</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 11 16 14 13 11 17 16 12 14 12 13 13 17 13 15 15 16 13 11 15 11 16 11 16 11</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 23 23 16 26 18 20 22 15 18 19 27 15 16 21 21 21 25 23 22 18 17 17 25 18 16</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 24 22 18 26 22 20 27 27 20 18 24 26 25 20 20 25 19 19 25 20 18 25 16 20 17</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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