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(v0.7.1.9021) CI fix for resistance_predict

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dr. M.S. (Matthijs) Berends
2019-08-04 10:48:41 +02:00
parent 4f3ef53c78
commit d6ab3896a1
16 changed files with 68 additions and 34 deletions
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man/resistance_predict.Rd
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@ -38,9 +38,9 @@ ggplot_rsi_predict(x, main = paste("Resistance Prediction of", x_name),
\item{minimum}{minimal amount of available isolates per year to include. Years containing less observations will be estimated by the model.}
\item{model}{the statistical model of choice. Defaults to a generalised linear regression model with binomial distribution, assuming that a period of zero resistance was followed by a period of increasing resistance leading slowly to more and more resistance. See Details for valid options.}
\item{model}{the statistical model of choice. Defaults to a generalised linear regression model with binomial distribution (i.e. using \code{\link{glm}(..., family = \link{binomial})}), assuming that a period of zero resistance was followed by a period of increasing resistance leading slowly to more and more resistance. See Details for valid options.}
\item{I_as_S}{a logical to indicate whether values \code{I} should be treated as \code{S}}
\item{I_as_S}{a logical to indicate whether values \code{I} should be treated as \code{S} (will otherwise be treated as \code{R})}
\item{preserve_measurements}{a logical to indicate whether predictions of years that are actually available in the data should be overwritten by the original data. The standard errors of those years will be \code{NA}.}