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reference/microorganisms.codes.md
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# Data Set with 6 036 Common Microorganism Codes
# Data Set with 6 050 Common Microorganism Codes
A data set containing commonly used codes for microorganisms, from
laboratory systems and [WHONET](https://whonet.org). Define your own
@@ -17,7 +17,7 @@ microorganisms.codes
## Format
A [tibble](https://tibble.tidyverse.org/reference/tibble.html) with 6
036 observations and 2 variables:
050 observations and 2 variables:
- `code`
Commonly used code of a microorganism. ***This is a unique
@@ -53,7 +53,7 @@ repository](https://github.com/msberends/AMR/tree/main/data-raw/datasets).
``` r
microorganisms.codes
#> # A tibble: 6,036 × 2
#> # A tibble: 6,050 × 2
#> code mo
#> <chr> <mo>
#> 1 1011 B_GRAMP
@@ -66,7 +66,7 @@ microorganisms.codes
#> 8 1100 B_STRPT
#> 9 1101 B_STRPT_VIRI
#> 10 1102 B_STRPT_HAEM
#> # ℹ 6,026 more rows
#> # ℹ 6,040 more rows
# 'ECO' or 'eco' is the WHONET code for E. coli:
microorganisms.codes[microorganisms.codes$code == "ECO", ]