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(v2.1.1.9227) unit test fixes

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dr. M.S. (Matthijs) Berends
2025-03-27 15:36:27 +01:00
parent 969a42cc8c
commit d77ad6bd6e
11 changed files with 21 additions and 17 deletions
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4
R/eucast_rules.R
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@ -656,7 +656,9 @@ eucast_rules <- function(x,
if (isTRUE(ampc_cephalosporin_resistance)) {
ampc_cephalosporin_resistance <- "R"
}
eucast_rules_df[which(eucast_rules_df$reference.rule %like% "ampc"), "to_value"] <- as.character(ampc_cephalosporin_resistance)
if (!is.null(eucast_rules_df$reference.rule)) {
eucast_rules_df[which(eucast_rules_df$reference.rule %like% "ampc"), "to_value"] <- as.character(ampc_cephalosporin_resistance)
}
}
# sometimes, the screenings are missing but the names are actually available