1
0
mirror of https://github.com/msberends/AMR.git synced 2025-07-11 15:01:53 +02:00

(v2.1.1.9118) move ggplot2 plotting functions to general 'plotting' man page

This commit is contained in:
2024-12-14 19:41:15 +01:00
parent bfef094bbc
commit d7de1bc33d
18 changed files with 332 additions and 291 deletions

View File

@ -1,9 +1,9 @@
Metadata-Version: 2.1
Name: AMR
Version: 2.1.1.9117
Version: 2.1.1.9118
Summary: A Python wrapper for the AMR R package
Home-page: https://github.com/msberends/AMR
Author: Dr. Matthijs Berends
Author: Matthijs Berends
Author-email: m.s.berends@umcg.nl
License: GPL 2
Project-URL: Bug Tracker, https://github.com/msberends/AMR/issues

View File

@ -117,8 +117,6 @@ from .functions import is_new_episode
from .functions import ggplot_pca
from .functions import ggplot_sir
from .functions import geom_sir
from .functions import theme_sir
from .functions import labels_sir_count
from .functions import guess_ab_col
from .functions import italicise_taxonomy
from .functions import italicize_taxonomy
@ -181,6 +179,8 @@ from .functions import mo_info
from .functions import mo_url
from .functions import mo_property
from .functions import pca
from .functions import theme_sir
from .functions import labels_sir_count
from .functions import resistance
from .functions import susceptibility
from .functions import sir_confidence_interval

View File

@ -381,12 +381,6 @@ def ggplot_sir(*args, **kwargs):
def geom_sir(*args, **kwargs):
"""See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
return convert_to_python(amr_r.geom_sir(*args, **kwargs))
def theme_sir(*args, **kwargs):
"""See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
return convert_to_python(amr_r.theme_sir(*args, **kwargs))
def labels_sir_count(*args, **kwargs):
"""See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
return convert_to_python(amr_r.labels_sir_count(*args, **kwargs))
def guess_ab_col(*args, **kwargs):
"""See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
return convert_to_python(amr_r.guess_ab_col(*args, **kwargs))
@ -573,6 +567,12 @@ def mo_property(*args, **kwargs):
def pca(*args, **kwargs):
"""See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
return convert_to_python(amr_r.pca(*args, **kwargs))
def theme_sir(*args, **kwargs):
"""See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
return convert_to_python(amr_r.theme_sir(*args, **kwargs))
def labels_sir_count(*args, **kwargs):
"""See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
return convert_to_python(amr_r.labels_sir_count(*args, **kwargs))
def resistance(*args, **kwargs):
"""See our website of the R package for the manual: https://msberends.github.io/AMR/index.html"""
return convert_to_python(amr_r.resistance(*args, **kwargs))

Binary file not shown.

Binary file not shown.

Binary file not shown.

View File

@ -2,14 +2,14 @@ from setuptools import setup, find_packages
setup(
name='AMR',
version='2.1.1.9117',
version='2.1.1.9118',
packages=find_packages(),
install_requires=[
'rpy2',
'numpy',
'pandas',
],
author='Dr. Matthijs Berends',
author='Matthijs Berends',
author_email='m.s.berends@umcg.nl',
description='A Python wrapper for the AMR R package',
long_description=open('README.md').read(),