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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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@ -375,17 +375,17 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co"># 1 S S I I R R</span></span>
<span><span class="co"># 2 I R S I R R</span></span>
<span><span class="co"># 3 R I I I R R</span></span>
<span><span class="co"># 4 R R R R I R</span></span>
<span><span class="co"># 5 S R I I R R</span></span>
<span><span class="co"># 6 I R R S S I</span></span>
<span><span class="co"># 1 I S R I R I</span></span>
<span><span class="co"># 2 I R R I S R</span></span>
<span><span class="co"># 3 S R S I S S</span></span>
<span><span class="co"># 4 S R S I I I</span></span>
<span><span class="co"># 5 R R S I S S</span></span>
<span><span class="co"># 6 S S S R I I</span></span>
<span><span class="co"># kanamycin</span></span>
<span><span class="co"># 1 R</span></span>
<span><span class="co"># 2 S</span></span>
<span><span class="co"># 3 R</span></span>
<span><span class="co"># 4 S</span></span>
<span><span class="co"># 3 S</span></span>
<span><span class="co"># 4 R</span></span>
<span><span class="co"># 5 R</span></span>
<span><span class="co"># 6 I</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
@ -428,40 +428,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3215</td>
<td align="right">64.30%</td>
<td align="right">3215</td>
<td align="right">64.30%</td>
<td align="right">3237</td>
<td align="right">64.74%</td>
<td align="right">3237</td>
<td align="right">64.74%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">978</td>
<td align="right">19.56%</td>
<td align="right">4193</td>
<td align="right">83.86%</td>
<td align="right">1000</td>
<td align="right">20.00%</td>
<td align="right">4237</td>
<td align="right">84.74%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">447</td>
<td align="right">8.94%</td>
<td align="right">4640</td>
<td align="right">92.80%</td>
<td align="right">410</td>
<td align="right">8.20%</td>
<td align="right">4647</td>
<td align="right">92.94%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">249</td>
<td align="right">4.98%</td>
<td align="right">4889</td>
<td align="right">97.78%</td>
<td align="right">261</td>
<td align="right">5.22%</td>
<td align="right">4908</td>
<td align="right">98.16%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">111</td>
<td align="right">2.22%</td>
<td align="right">92</td>
<td align="right">1.84%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>