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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9072</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9073</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -183,43 +183,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.025 <=0.001 1 16 2 0.025 0.005 0.25 <=0.001</span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.002 8 0.002 <=0.001 0.025 256 <=0.001 8 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 16 4 1 1 0.25 0.005 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 0.5 4 1 <=0.001 0.125 16 256 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.125 128 4 0.5 16 0.0625 4 0.005 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] <=0.001 8 64 64 4 0.005 2 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 31 45 50 48 45 18 18 19 9 37 23 45 35 18 34 47 36 31 12 21 7 42 30 9 40</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 47 28 48 25 23 10 14 47 37 13 14 7 23 15 21 7 11 41 41 7 40 30 47 26 11</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'rsi'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I I I I I R R S S I R R I I R R R I S S R I I S S</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S R R I S I R R R R R I I S I S S S R R R R I S I</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.01 0.25 <=0.002 8 0.0625 0.125 128 4 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 2 4 0.005 16 <=0.002 1 0.005 0.25 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.01 0.025 2 0.125 64 <=0.002 <=0.002</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 1 0.0625 2 64 1 0.5 32 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.025 16 0.01 0.005 0.5 0.025 0.0625 16 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.005 <=0.001 0.01 0.002 32 4 2 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 8 1 16 2 8 16 <=0.5 2 1 2 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] <=0.5 1 8 <=0.5 1 16 4 16 <=0.5 4 16 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=64 32 32 2 16 2 >=64 32 4 >=64 1 32 32 8 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] >=64 4 8 2 4 >=64 16 4 1 4 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.0625 2 4 0.5 0.125 0.0625 <=0.025 2 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] <=0.025 2 0.5 1 4 0.25 <=0.025 0.25 <=0.025</span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 2 0.125 0.0625 <=0.025 2 1 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 8 16 1 2 8 0.25 8 8 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 1 0.0625 8 16 8 0.5 0.025 4 1 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 4 0.025 2 0.5 8 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 22 12 42 49 11 15 16 24 16 42 48 15 48 13 45 47 45 39 48 36 11 40 50 42 36</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 41 18 36 26 41 46 31 9 9 33 20 47 10 50 29 49 25 17 48 8 37 41 42 31 42</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 13 11 16 14 15 11 13 14 12 13 11 12 14 13 11 16 15 12 15 15 13 12 14 16</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 13 15 14 14 11 12 16 12 15 17 13 15 12 11 12 17 16 17 17 15 15 16 11 15 15</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 19 16 27 26 25 23 23 20 19 15 22 23 21 22 15 17 24 21 19 21 27 25 16 15 20</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 19 19 26 15 15 19 15 20 26 20 26 21 23 26 27 21 15 26 24 26 15 17 20 18 23</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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