mirror of
https://github.com/msberends/AMR.git
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(v1.6.0.9031) tinytest unit tests
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46
.github/workflows/check.yaml
vendored
46
.github/workflows/check.yaml
vendored
@ -81,7 +81,7 @@ jobs:
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- {os: ubuntu-16.04, r: '3.2', allowfail: true, rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
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- {os: ubuntu-16.04, r: '3.1', allowfail: true, rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
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- {os: ubuntu-16.04, r: '3.0', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
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env:
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R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
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RSPM: ${{ matrix.config.rspm }}
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@ -93,29 +93,14 @@ jobs:
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with:
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r-version: ${{ matrix.config.r }}
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- uses: r-lib/actions/setup-pandoc@master
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# - uses: r-lib/actions/setup-pandoc@master
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- name: Install remotes package
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if: matrix.config.r != '3.0'
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run: |
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install.packages('remotes')
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shell: Rscript {0}
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- name: Query dependencies
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if: matrix.config.r != '3.0'
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run: |
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saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
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shell: Rscript {0}
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# - name: Query dependencies
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# if: matrix.config.r != '3.0'
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# run: |
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# saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
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# shell: Rscript {0}
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- name: Cache R packages
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if: runner.os != 'Windows' && matrix.config.r != '3.0'
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# && matrix.config.r != '3.0' && matrix.config.r != '3.1' && matrix.config.r != '3.2'
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uses: actions/cache@v1
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with:
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path: ${{ env.R_LIBS_USER }}
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key: ${{ matrix.config.os }}-r-${{ matrix.config.r }}-3-${{ hashFiles('.github/depends.Rds') }}
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restore-keys: ${{ matrix.config.os }}-r-${{ matrix.config.r }}-3-
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- name: Install Linux dependencies
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if: runner.os == 'Linux'
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# update the below with sysreqs::sysreqs("DESCRIPTION") and check the "DEB" entries (for Ubuntu).
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@ -123,11 +108,18 @@ jobs:
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run: |
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sudo apt install -y libssl-dev pandoc pandoc-citeproc libxml2-dev libicu-dev libcurl4-openssl-dev
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- name: Update package dependencies using remotes package
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if: matrix.config.r != '3.0'
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- name: Update package dependencies
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run: |
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remotes::install_deps(dependencies = TRUE)
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source("data-raw/_install_deps.R")
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shell: Rscript {0}
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- name: Cache R packages
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# if: runner.os != 'Windows'
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uses: actions/cache@v1
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with:
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path: ${{ env.R_LIBS_USER }}
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key: ${{ matrix.config.os }}-r-${{ matrix.config.r }} # -${{ hashFiles('.github/depends.Rds') }}
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restore-keys: ${{ matrix.config.os }}-r-${{ matrix.config.r }}
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- name: Session info
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run: |
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@ -145,12 +137,13 @@ jobs:
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_R_CHECK_LENGTH_1_CONDITION_: verbose
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_R_CHECK_LENGTH_1_LOGIC2_: verbose
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R_LIBS_USER: ${{ env.R_LIBS_USER }}
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R_TINYTEST: true
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run: |
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tar -xf data-raw/AMR_latest.tar.gz
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rm -rf AMR/vignettes
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R CMD check AMR
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shell: bash
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- name: Run R CMD check on Linux and macOS
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if: runner.os != 'Windows'
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env:
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@ -160,6 +153,7 @@ jobs:
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_R_CHECK_LENGTH_1_CONDITION_: verbose
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_R_CHECK_LENGTH_1_LOGIC2_: verbose
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R_LIBS_USER: ${{ env.R_LIBS_USER }}
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R_TINYTEST: true
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run: |
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tar -xf data-raw/AMR_latest.tar.gz
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rm -rf AMR/vignettes
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