P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-09-09 18:09:37 +02:00
Code Releases Activity

(v1.6.0.9031) tinytest unit tests

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2021-05-15 21:36:22 +02:00
parent 9a381c8d18
commit d8c91d5876
71 changed files with 2671 additions and 2901 deletions
Download Patch File Download Diff File Expand all files Collapse all files

9
NEWS.md
View File

@@ -1,5 +1,5 @@
# `AMR` 1.6.0.9030
## <small>Last updated: 13 May 2021</small>
# `AMR` 1.6.0.9031
## <small>Last updated: 15 May 2021</small>
### New
* Function `custom_eucast_rules()` that brings support for custom AMR rules in `eucast_rules()`
@@ -32,7 +32,7 @@
* Altered the RStudio addin, so it now iterates over `%like%` -> `%unlike%` -> `%like_case%` -> `%unlike_case%` if you keep pressing your keyboard shortcut
* Fixed an installation error on R-3.0
* Added `info` argument to `as.mo()` to turn on/off the progress bar
* Fixed a bug that `col_mo` for some functions (esp. `eucast_rules()` and `mdro()`) could not be column names of the `microorganisms` data set as it would throw an error
* Fixed a bug where `col_mo` in some functions (esp. `eucast_rules()` and `mdro()`) could not be a column name of the `microorganisms` data set as it would throw an error
* Fix for transforming numeric values to RSI (`as.rsi()`) when the `vctrs` package is loaded (i.e., when using tidyverse)
* Colour fix for using `barplot()` on an RSI class
* Added 25 common system codes for bacteria to the `microorganisms.codes` data set
@@ -42,6 +42,9 @@
* Fix for plotting missing MIC/disk diffusion values
* Updated join functions to always use `dplyr` join functions if the `dplyr` package is installed - now also preserving grouped variables
### Other
* All unit tests are now processed by the `tinytest` package, instead of the `testthat` package. The `testthat` package unfortunately requires tons of dependencies that are also heavy and only usable for recent R versions, defeating the purpose to test our package under less recent R versions. On the contrary, the `tinytest` package is very lightweight and dependency-free.
# `AMR` 1.6.0