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mirror of https://github.com/msberends/AMR.git synced 2025-07-21 12:13:20 +02:00

First CRAN submission edits

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2018-02-22 20:48:48 +01:00
parent 77194527b5
commit d8da8daf9a
20 changed files with 162 additions and 94 deletions

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@ -12,6 +12,26 @@ AMR can also be predicted for the forthcoming years with the `rsi_predict` funct
It also contains functions to translate antibiotic codes from the lab (like `"AMOX"`) or the [WHO](https://www.whocc.no/atc_ddd_index/?code=J01CA04&showdescription=no) (like `"J01CA04"`) to trivial names (like `"amoxicillin"`) and vice versa.
## How to get it?
[![CRAN_Badge](http://www.r-pkg.org/badges/version/AMR)](http://cran.r-project.org/package=AMR)
This package is available on CRAN (latest stable version) and also here on GitHub (latest development version).
#### Latest stable version from CRAN (recommended)
RStudio:
- Click on `Tools` and then `Install Packages..`
- Type in `AMR` and press <kbd>Install</kbd>
Other:
```r
install.packages("AMR")
```
#### Latest development version from GitHub
```r
devtools::install_github("msberends/AMR")
```
## How to use it?
```r
# Call it with:
@ -95,28 +115,6 @@ abname(...)
abname("J01CR02", from = "atc", to = "umcg") # "AMCL"
```
## How to get it?
This package is only available here on GitHub, but respects the [CRAN Repository Policy](https://cran.r-project.org/web/packages/policies.html).
*Installation commands:*
```r
library(devtools)
install_github("msberends/AMR")
```
*Working behind a proxy? Then use:*
```r
library(httr)
library(devtools)
set_config(use_proxy("yourproxydomain.com",
8080,
"username",
"password",
"any")) # change "any" to "basic" or "digest" if needed
install_github("msberends/AMR")
reset_config()
```
## Authors
- [Berends MS](https://github.com/msberends)<sup>1,2</sup>, PhD Student