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(v1.7.1.9075) assignment operator

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dr. M.S. (Matthijs) Berends
2021-12-14 22:59:27 +01:00
parent 76dee66852
commit d9274bcd0a
8 changed files with 83 additions and 85 deletions
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10
vignettes/datasets.Rmd
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@ -120,10 +120,8 @@ Included (sub)species per taxonomic kingdom:
```{r, echo = FALSE}
microorganisms %>%
pull(kingdom) %>%
table() %>%
as.data.frame() %>%
mutate(Freq = format(Freq, big.mark = ",")) %>%
count(kingdom) %>%
mutate(n = format(n, big.mark = ",")) %>%
setNames(c("Kingdom", "Number of (sub)species")) %>%
print_df()
```
@ -222,7 +220,7 @@ This data set is in R available as `intrinsic_resistant`, after you load the `AM
### Source
This data set contains all defined intrinsic resistance by EUCAST of all bug-drug combinations, and is based on `r AMR:::format_eucast_version_nr("3.2")`.
This data set contains all defined intrinsic resistance by EUCAST of all bug-drug combinations, and is based on `r AMR:::format_eucast_version_nr("3.3")`.
### Example content
@ -230,6 +228,8 @@ Example rows when filtering on *Enterobacter cloacae*:
```{r, echo = FALSE}
intrinsic_resistant %>%
transmute(microorganism = mo_name(mo),
antibiotic = ab_name(ab)) %>%
filter(microorganism == "Enterobacter cloacae") %>%
print_df(rows = Inf)
```