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(v3.0.0.9008) fix ggplot_sir(), support lighter green for SDD

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dr. M.S. (Matthijs) Berends
2025-07-17 17:05:41 +02:00
parent 8dab0a3730
commit d94bdd2c6a
23 changed files with 237 additions and 164 deletions
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8
man/ggplot_sir.Rd
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@ -9,10 +9,10 @@ ggplot_sir(data, position = NULL, x = "antibiotic",
fill = "interpretation", facet = NULL, breaks = seq(0, 1, 0.1),
limits = NULL, translate_ab = "name", combine_SI = TRUE,
minimum = 30, language = get_AMR_locale(), nrow = NULL, colours = c(S
= "#3CAEA3", SI = "#3CAEA3", I = "#F6D55C", IR = "#ED553B", R = "#ED553B"),
datalabels = TRUE, datalabels.size = 2.5, datalabels.colour = "grey15",
title = NULL, subtitle = NULL, caption = NULL,
x.title = "Antimicrobial", y.title = "Proportion", ...)
= "#3CAEA3", SI = "#3CAEA3", SDD = "#8FD6C4", I = "#F6D55C", IR = "#ED553B",
R = "#ED553B"), datalabels = TRUE, datalabels.size = 2.5,
datalabels.colour = "grey15", title = NULL, subtitle = NULL,
caption = NULL, x.title = "Antimicrobial", y.title = "Proportion", ...)
geom_sir(position = NULL, x = c("antibiotic", "interpretation"),
fill = "interpretation", translate_ab = "name", minimum = 30,