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update to septic_patients, speed improvements

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dr. M.S. (Matthijs) Berends
2018-07-25 14:17:04 +02:00
parent 03a3cb397b
commit d9e204031d
26 changed files with 273 additions and 233 deletions
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9
man/as.mic.Rd
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@ -15,19 +15,22 @@ is.mic(x)
\item{na.rm}{a logical indicating whether missing values should be removed}
}
\value{
Ordered factor with new class \code{mic} and new attributes \code{package} and \code{package.version}
Ordered factor with new class \code{mic} and new attribute \code{package}
}
\description{
This transforms a vector to a new class\code{mic}, which is an ordered factor with valid MIC values as levels. Invalid MIC values will be translated as \code{NA} with a warning.
This transforms a vector to a new class \code{mic}, which is an ordered factor with valid MIC values as levels. Invalid MIC values will be translated as \code{NA} with a warning.
}
\examples{
mic_data <- as.mic(c(">=32", "1.0", "1", "1.00", 8, "<=0.128", "8", "16", "16"))
is.mic(mic_data)
# this can also coerce combined MIC/RSI values:
as.mic("<=0.002; R") # will return <=0.002
as.mic("<=0.002; S") # will return <=0.002
plot(mic_data)
barplot(mic_data)
}
\seealso{
\code{\link{as.rsi}}
}
\keyword{mic}