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update to septic_patients, speed improvements

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dr. M.S. (Matthijs) Berends
2018-07-25 14:17:04 +02:00
parent 03a3cb397b
commit d9e204031d
26 changed files with 273 additions and 233 deletions
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7
man/as.rsi.Rd
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@ -13,7 +13,7 @@ is.rsi(x)
\item{x}{vector}
}
\value{
Ordered factor with new class \code{rsi} and new attributes \code{package} and \code{package.version}
Ordered factor with new class \code{rsi} and new attribute \code{package}
}
\description{
This transforms a vector to a new class \code{rsi}, which is an ordered factor with levels \code{S < I < R}. Invalid antimicrobial interpretations will be translated as \code{NA} with a warning.
@ -24,9 +24,12 @@ rsi_data <- as.rsi(c(rep("S", 474), rep("I", 36), rep("R", 370), "A", "B", "C"))
is.rsi(rsi_data)
# this can also coerce combined MIC/RSI values:
as.rsi("<= 0.002; R") # will return R
as.rsi("<= 0.002; S") # will return S
plot(rsi_data) # for percentages
barplot(rsi_data) # for frequencies
}
\seealso{
\code{\link{as.mic}}
}
\keyword{rsi}