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(v2.1.1.9056) example fix

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dr. M.S. (Matthijs) Berends
2024-06-17 14:52:18 +02:00
parent 1e65b5a289
commit d9e66fb118
5 changed files with 21 additions and 18 deletions
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12
R/sir.R
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@ -199,13 +199,13 @@
#' ab = "antibiotic",
#' guideline = "CLSI")))
#' df_long %>%
#' # given certain columns, e.g. from AMP to TOB
#' mutate_at(vars(AMP:TOB), as.sir,
#' # given certain columns, e.g. from 'cipro' to 'genta'
#' mutate_at(vars(cipro:genta), as.sir,
#' mo = "bacteria",
#' ab = "antibiotic",
#' guideline = "CLSI")
#' df_long %>%
#' mutate(across(AMP:TOB,
#' mutate(across(cipro:genta,
#' function(x) as.sir(x,
#' mo = "bacteria",
#' ab = "antibiotic",
@ -229,13 +229,13 @@
#' guideline = "CLSI")))
#' df_long %>%
#' # given certain columns, e.g. from AMP to TOB
#' mutate_at(vars(AMP:TOB), as.sir,
#' mutate_at(vars(cipro:genta), as.sir,
#' mo = "bacteria",
#' ab = "antibiotic",
#' host = "animal_species",
#' guideline = "CLSI")
#' df_long %>%
#' mutate(across(AMP:TOB,
#' mutate(across(cipro:genta,
#' function(x) as.sir(x,
#' mo = "bacteria",
#' ab = "antibiotic",
@ -254,7 +254,7 @@
#' as.sir() # automatically determines urine isolates
#'
#' df_wide %>%
#' mutate_at(vars(AMP:TOB), as.sir, mo = "E. coli", uti = TRUE)
#' mutate_at(vars(cipro:genta), as.sir, mo = "E. coli", uti = TRUE)
#' }
#'
#'