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ggplot_rsi example update, more unit tests

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dr. M.S. (Matthijs) Berends
2018-08-29 16:25:57 +02:00
parent 029157b3be
commit d9e68e0a50
10 changed files with 121 additions and 18 deletions
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7
NEWS.md
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@ -6,7 +6,7 @@
* Function `is.rsi.eligible` to check for columns that have valid antimicrobial results, but do not have the `rsi` class yet. Transform the columns of your raw data with: `data %>% mutate_if(is.rsi.eligible, as.rsi)`
* Functions `as.atc` and `is.atc` to transform/look up antibiotic ATC codes as defined by the WHO. The existing function `guess_atc` is now an alias of `as.atc`.
* Aliases for existing function `mo_property`: `mo_aerobic`, `mo_family`, `mo_fullname`, `mo_genus`, `mo_gramstain`, `mo_gramstain_nl`, `mo_property`, `mo_species`, `mo_subspecies`, `mo_type`, `mo_type_nl`
* Function `ab_property` and its aliases: `ab_certe`, `ab_official`, `ab_official_nl`, `ab_property`, `ab_trivial_nl`, `ab_umcg`
* Function `ab_property` and its aliases: `ab_certe`, `ab_official`, `ab_official_nl`, `ab_property`, `ab_trivial_nl`, `ab_umcg`, `ab_tradenames`
* Introduction to AMR as a vignette
#### Changed
@ -22,7 +22,7 @@
# [1] "R01AX06" "J01CA04" "J01FA10" "J01CF05"
```
* Removed function `ratio` as it is not really the scope of this package
* Fix in `as.mic` for values ending in zeroes after a real number
* Fix for `as.mic` for values ending in zeroes after a real number
* Huge speed improvement for `as.bactid`
* Added parameters `minimum` and `as_percent` to `portion_df`
* Support for quasiquotation in the functions series `count_*` and `portions_*`, and `n_rsi`. This allows to check for more than 2 vectors or columns.
@ -46,8 +46,7 @@
my_list %>% freq(age)
my_list %>% freq(sex)
```
* Added "Furabid" as a trade name to Nitrofurantoine in the `antibiotics` data set
#### Other
* More unit tests to ensure better integrity of functions