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quasiquotation, alpha for geom_rsi

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dr. M.S. (Matthijs) Berends
2018-08-23 00:40:36 +02:00
parent 43ba16f8ed
commit da5379c881
18 changed files with 304 additions and 235 deletions
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NEWS.md
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# 0.3.0.90xx (latest development version)
#### New
* Functions `count_R`, `count_IR`, `count_I`, `count_SI` and `count_S` to selectively count resistant or susceptibile isolates
* Functions `count_R`, `count_IR`, `count_I`, `count_SI` and `count_S` to selectively count resistant or susceptible isolates
* Function `is.rsi.eligible` to check for columns that have valid antimicrobial results, but do not have the `rsi` class yet. Transform the columns of your raw data with: `data %>% mutate_if(is.rsi.eligible, as.rsi)`
#### Changed
* Added parameters `minimum` and `as_percent` to `portion_df`
* Support for quasiquotation in the functions series `count_*` and `portions_*`, and `n_rsi`. This allow to check for more than 2 vectors or columns.
* `septic_patients %>% select(amox, cipr) %>% count_R()`
* `septic_patients %>% portion_S(amcl)`
* `septic_patients %>% portion_S(amcl, gent)`
* `septic_patients %>% portion_S(amcl, gent, pita)`
* Edited `ggplot_rsi` and `geom_rsi` so they can cope with `count_df`. The new `fun` parameter has value `portion_df` at default, but can be set to `count_df`.
* Fix for `ggplot_rsi` when the `ggplot2` was not loaded
* Fix for `ggplot_rsi` when the `ggplot2` package was not loaded
* Added parameter `alpha` to `ggplot_rsi` and `geom_rsi`
# 0.3.0 (latest stable version)
**Published on CRAN: 2018-08-14**