diff --git a/.github/workflows/check.yaml b/.github/workflows/check.yaml
index d4ef49d8..62c35ab4 100644
--- a/.github/workflows/check.yaml
+++ b/.github/workflows/check.yaml
@@ -117,9 +117,8 @@ jobs:
brew install mariadb-connector-c
- name: Install dependencies
- if: always()
run: |
- utils::install.packages(strsplit(utils::packageDescription("AMR")$Suggests, ",\n")[[1]])
+ utils::update.packages(ask = FALSE)
shell: Rscript {0}
- name: Session info
@@ -151,10 +150,14 @@ jobs:
if: always()
run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
shell: bash
+
+ - name: Install packages to check for new deps
+ run: |
+ R CMD INSTALL data-raw/AMR_*.tar.gz
- name: Upload check results
if: failure()
uses: actions/upload-artifact@master
with:
- name: ${{ runner.os }}-r${{ matrix.config.r }}-results
+ name: ${{ matrix.config.os }}-r${{ matrix.config.r }}-results
path: check
diff --git a/DESCRIPTION b/DESCRIPTION
index 57719f67..516052e5 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,6 +1,6 @@
Package: AMR
-Version: 1.4.0.9056
-Date: 2021-01-03
+Version: 1.4.0.9057
+Date: 2021-01-04
Title: Antimicrobial Resistance Analysis
Authors@R: c(
person(role = c("aut", "cre"),
diff --git a/NEWS.md b/NEWS.md
index cea1f980..7e8509a3 100755
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,5 +1,5 @@
-# AMR 1.4.0.9056
-## Last updated: 3 January 2021
+# AMR 1.4.0.9057
+## Last updated: 4 January 2021
### New
* Functions `get_episode()` and `is_new_episode()` to determine (patient) episodes which are not necessarily based on microorganisms. The `get_episode()` function returns the index number of the episode per group, while the `is_new_episode()` function returns values `TRUE`/`FALSE` to indicate whether an item in a vector is the start of a new episode. They also support `dplyr`s grouping (i.e. using `group_by()`):
```r
diff --git a/data-raw/AMR_1.4.0.9056.tar.gz b/data-raw/AMR_1.4.0.9057.tar.gz
similarity index 81%
rename from data-raw/AMR_1.4.0.9056.tar.gz
rename to data-raw/AMR_1.4.0.9057.tar.gz
index c1c3c8fe..a9f84586 100644
Binary files a/data-raw/AMR_1.4.0.9056.tar.gz and b/data-raw/AMR_1.4.0.9057.tar.gz differ
diff --git a/docs/404.html b/docs/404.html
index 923581a4..4c364517 100644
--- a/docs/404.html
+++ b/docs/404.html
@@ -81,7 +81,7 @@
NEWS.md
-