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abname improvement, small fixes

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dr. M.S. (Matthijs) Berends
2018-08-13 11:00:53 +02:00
parent ce2cdb9309
commit dba06c3295
9 changed files with 201 additions and 165 deletions
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NEWS.md
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@ -35,13 +35,14 @@
* Possibility to globally set the default for the amount of items to print, with `options(max.print.freq = n)` where *n* is your preset value
#### Changed
* Improvements for forcasting with `resistance_predict` and added more examples
* More antibiotics for EUCAST rules
* Improvements for forecasting with `resistance_predict` and added more examples
* More antibiotics added as parameters for EUCAST rules
* Updated version of the `septic_patients` data set to better reflect the reality
* Pretty printing for tibbles removed as it is not really the scope of this package
* Printing of `mic` and `rsi` classes now returns all values - use `freq` to check distributions
* Improved speed of key antibiotics comparison for determining first isolates
* Column names for the `key_antibiotics` function are now generic: 6 for broadspectrum ABs, 6 for Gram-positive specific and 6 for Gram-negative specific ABs
* Speed improvement for the `abname` function
* `%like%` now supports multiple patterns
* Frequency tables are now actual `data.frame`s with altered console printing to make it look like a frequency table. Because of this, the parameter `toConsole` is not longer needed.
* Fix for `freq` where the class of an item would be lost