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abname improvement, small fixes

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2018-08-13 11:00:53 +02:00
parent ce2cdb9309
commit dba06c3295
9 changed files with 201 additions and 165 deletions
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19
tests/testthat/test-abname.R Normal file
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@ -0,0 +1,19 @@
context("abname.R")
test_that("abname works", {
expect_equal(abname("AMOX"), "Amoxicillin")
expect_equal(abname(c("AMOX", "GENT")), c("Amoxicillin", "Gentamicin"))
expect_equal(abname(c("AMOX+GENT")), "Amoxicillin + gentamicin")
expect_equal(abname("AMOX", from = 'umcg'), "Amoxicillin")
expect_equal(abname("amox", from = 'molis', tolower = TRUE), "amoxicillin")
expect_equal(abname("J01CA04", from = 'atc'), "Amoxicillin")
expect_equal(abname(c("amox", "J01CA04", "Trimox", "dispermox", "Amoxil")),
rep("Amoxicillin", 5))
expect_equal(abname("AMOX", to = 'atc'), "J01CA04")
expect_error(abname("AMOX", to = c(1:3)))
expect_error(abname("AMOX", to = "test"))
expect_warning(abname("TEST
"))
expect_warning(abname("AMOX or GENT"))
})

17
tests/testthat/test-atc.R
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@ -4,7 +4,6 @@ test_that("atc_property works", {
if (!is.null(curl::nslookup("www.whocc.no", error = FALSE))) {
expect_equal(tolower(atc_property("J01CA04", property = "Name")), "amoxicillin")
expect_equal(atc_property("J01CA04", property = "unit"), "g")
expect_equal(atc_property("J01CA04", property = "DDD"),
atc_ddd("J01CA04"))
@ -19,22 +18,6 @@ test_that("atc_property works", {
}
})
test_that("abname works", {
expect_equal(abname("AMOX"), "Amoxicillin")
expect_equal(abname(c("AMOX", "GENT")), c("Amoxicillin", "Gentamicin"))
expect_equal(abname(c("AMOX+GENT")), "Amoxicillin + gentamicin")
expect_equal(abname("AMOX", from = 'umcg'), "Amoxicillin")
expect_equal(abname("amox", from = 'molis', tolower = TRUE), "amoxicillin")
expect_equal(abname("J01CA04", from = 'atc'), "Amoxicillin")
expect_equal(abname("AMOX", to = 'atc'), "J01CA04")
expect_equal(abname("AMOX en GENT"), "Amoxicillin + gentamicin")
expect_error(abname("AMOX", to = c(1:3)))
expect_error(abname("AMOX", to = "test"))
expect_warning(abname("TEST
"))
expect_warning(abname("AMOX or GENT"))
})
test_that("guess_atc works", {
expect_equal(guess_atc(c("J01FA01",
"Erythromycin",