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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9008</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9009</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -187,7 +187,7 @@
website update since they are based on randomly created values and the
page was written in <a href="https://rmarkdown.rstudio.com/" class="external-link">R
Markdown</a>. However, the methodology remains unchanged. This page was
generated on 15 April 2023.</p>
generated on 17 April 2023.</p>
<div class="section level2">
<h2 id="introduction">Introduction<a class="anchor" aria-label="anchor" href="#introduction"></a>
</h2>
@ -243,21 +243,21 @@ make the structure of your data generally look like this:</p>
</tr></thead>
<tbody>
<tr class="odd">
<td align="center">2023-04-15</td>
<td align="center">2023-04-17</td>
<td align="center">abcd</td>
<td align="center">Escherichia coli</td>
<td align="center">S</td>
<td align="center">S</td>
</tr>
<tr class="even">
<td align="center">2023-04-15</td>
<td align="center">2023-04-17</td>
<td align="center">abcd</td>
<td align="center">Escherichia coli</td>
<td align="center">S</td>
<td align="center">R</td>
</tr>
<tr class="odd">
<td align="center">2023-04-15</td>
<td align="center">2023-04-17</td>
<td align="center">efgh</td>
<td align="center">Escherichia coli</td>
<td align="center">R</td>
@ -962,110 +962,110 @@ antibiograms:</p>
<tr class="odd">
<td align="left">Cardial</td>
<td align="left">
<em>E. coli</em> (418-418)</td>
<td align="right">63</td>
<td align="right">61</td>
<td align="right">58</td>
<td align="right">63</td>
</tr>
<tr class="even">
<td align="left">Respiratory</td>
<td align="left">
<em>E. coli</em> (414-414)</td>
<td align="right">63</td>
<td align="right">58</td>
<td align="right">57</td>
<td align="right">63</td>
</tr>
<tr class="odd">
<td align="left">Rheumatic</td>
<td align="left">
<em>E. coli</em> (418-418)</td>
<td align="right">66</td>
<td align="right">56</td>
<td align="right">58</td>
<td align="right">63</td>
</tr>
<tr class="even">
<td align="left">Cardial</td>
<td align="left">
<em>K. pneumoniae</em> (98-98)</td>
<td align="right">56</td>
<td align="right">51</td>
<td align="right">56</td>
<td align="right">63</td>
</tr>
<tr class="odd">
<td align="left">Respiratory</td>
<td align="left">
<em>K. pneumoniae</em> (113-113)</td>
<td align="right">69</td>
<td align="right">50</td>
<td align="right">57</td>
<td align="right">60</td>
</tr>
<tr class="even">
<td align="left">Rheumatic</td>
<td align="left">
<em>K. pneumoniae</em> (105-105)</td>
<td align="right">63</td>
<td align="right">56</td>
<td align="right">64</td>
<td align="right">57</td>
</tr>
<tr class="odd">
<td align="left">Cardial</td>
<td align="left">
<em>S. aureus</em> (227-227)</td>
<td align="right">63</td>
<td align="right">55</td>
<td align="right">56</td>
<td align="right">63</td>
</tr>
<tr class="even">
<td align="left">Respiratory</td>
<td align="left">
<em>S. aureus</em> (204-204)</td>
<em>E. coli</em> (443-443)</td>
<td align="right">67</td>
<td align="right">59</td>
<td align="right">59</td>
<td align="right">65</td>
<td align="right">61</td>
</tr>
<tr class="even">
<td align="left">Respiratory</td>
<td align="left">
<em>E. coli</em> (395-395)</td>
<td align="right">65</td>
<td align="right">57</td>
<td align="right">58</td>
<td align="right">60</td>
<td align="right">63</td>
</tr>
<tr class="odd">
<td align="left">Rheumatic</td>
<td align="left">
<em>E. coli</em> (412-412)</td>
<td align="right">59</td>
<td align="right">58</td>
<td align="right">56</td>
<td align="right">61</td>
</tr>
<tr class="even">
<td align="left">Cardial</td>
<td align="left">
<em>K. pneumoniae</em> (108-108)</td>
<td align="right">61</td>
<td align="right">55</td>
<td align="right">48</td>
<td align="right">59</td>
</tr>
<tr class="odd">
<td align="left">Respiratory</td>
<td align="left">
<em>K. pneumoniae</em> (109-109)</td>
<td align="right">62</td>
<td align="right">51</td>
<td align="right">64</td>
<td align="right">62</td>
</tr>
<tr class="even">
<td align="left">Rheumatic</td>
<td align="left">
<em>K. pneumoniae</em> (99-99)</td>
<td align="right">66</td>
<td align="right">52</td>
<td align="right">65</td>
<td align="right">59</td>
</tr>
<tr class="odd">
<td align="left">Cardial</td>
<td align="left">
<em>S. aureus</em> (230-230)</td>
<td align="right">65</td>
<td align="right">54</td>
<td align="right">67</td>
<td align="right">56</td>
<td align="right">57</td>
<td align="right">65</td>
<td align="right">58</td>
</tr>
<tr class="even">
<td align="left">Respiratory</td>
<td align="left">
<em>S. aureus</em> (227-227)</td>
<td align="right">60</td>
<td align="right">56</td>
<td align="right">59</td>
<td align="right">67</td>
</tr>
<tr class="odd">
<td align="left">Rheumatic</td>
<td align="left">
<em>S. aureus</em> (204-204)</td>
<td align="right">66</td>
<td align="right">59</td>
<td align="right">55</td>
<td align="right">64</td>
</tr>
<tr class="even">
<td align="left">Cardial</td>
<td align="left">
<em>S. pneumoniae</em> (139-139)</td>
<em>S. pneumoniae</em> (145-145)</td>
<td align="right">63</td>
<td align="right">58</td>
<td align="right">51</td>
<td align="right">60</td>
<td align="right">66</td>
<td align="right">61</td>
<td align="right">68</td>
</tr>
<tr class="odd">
<td align="left">Respiratory</td>
<td align="left">
<em>S. pneumoniae</em> (128-128)</td>
<td align="right">62</td>
<td align="right">57</td>
<td align="right">61</td>
<td align="right">61</td>
<em>S. pneumoniae</em> (123-123)</td>
<td align="right">60</td>
<td align="right">59</td>
<td align="right">63</td>
<td align="right">60</td>
</tr>
<tr class="even">
<td align="left">Rheumatic</td>
<td align="left">
<em>S. pneumoniae</em> (132-132)</td>
<td align="right">73</td>
<td align="right">60</td>
<td align="right">58</td>
<td align="right">70</td>
<em>S. pneumoniae</em> (131-131)</td>
<td align="right">69</td>
<td align="right">51</td>
<td align="right">55</td>
<td align="right">68</td>
</tr>
</tbody>
</table>
@ -1090,45 +1090,45 @@ antibiograms:</p>
<tbody>
<tr class="odd">
<td align="left">Cardial</td>
<td align="left">Gram-negative (516-516)</td>
<td align="right">62</td>
<td align="right">59</td>
<td align="right">63</td>
<td align="left">Gram-negative (551-551)</td>
<td align="right">66</td>
<td align="right">58</td>
<td align="right">64</td>
</tr>
<tr class="even">
<td align="left">Respiratory</td>
<td align="left">Gram-negative (527-527)</td>
<td align="left">Gram-negative (504-504)</td>
<td align="right">64</td>
<td align="right">56</td>
<td align="right">62</td>
</tr>
<tr class="odd">
<td align="left">Rheumatic</td>
<td align="left">Gram-negative (523-523)</td>
<td align="right">65</td>
<td align="right">56</td>
<td align="right">62</td>
<td align="left">Gram-negative (511-511)</td>
<td align="right">60</td>
<td align="right">57</td>
<td align="right">60</td>
</tr>
<tr class="even">
<td align="left">Cardial</td>
<td align="left">Gram-positive (366-366)</td>
<td align="right">61</td>
<td align="right">54</td>
<td align="right">64</td>
<td align="left">Gram-positive (375-375)</td>
<td align="right">66</td>
<td align="right">57</td>
<td align="right">62</td>
</tr>
<tr class="odd">
<td align="left">Respiratory</td>
<td align="left">Gram-positive (332-332)</td>
<td align="right">64</td>
<td align="right">60</td>
<td align="left">Gram-positive (350-350)</td>
<td align="right">60</td>
<td align="right">57</td>
<td align="right">65</td>
</tr>
<tr class="even">
<td align="left">Rheumatic</td>
<td align="left">Gram-positive (362-362)</td>
<td align="right">68</td>
<td align="right">56</td>
<td align="left">Gram-positive (335-335)</td>
<td align="right">67</td>
<td align="right">56</td>
<td align="right">66</td>
</tr>
</tbody>
</table>
@ -1152,45 +1152,45 @@ antibiograms:</p>
<tbody>
<tr class="odd">
<td align="left">Cardial</td>
<td align="left">Gram-negative (516-516)</td>
<td align="right">62</td>
<td align="right">75</td>
<td align="right">74</td>
<td align="left">Gram-negative (551-551)</td>
<td align="right">66</td>
<td align="right">77</td>
<td align="right">77</td>
</tr>
<tr class="even">
<td align="left">Respiratory</td>
<td align="left">Gram-negative (527-527)</td>
<td align="left">Gram-negative (504-504)</td>
<td align="right">64</td>
<td align="right">76</td>
<td align="right">75</td>
<td align="right">77</td>
<td align="right">74</td>
</tr>
<tr class="odd">
<td align="left">Rheumatic</td>
<td align="left">Gram-negative (523-523)</td>
<td align="right">65</td>
<td align="right">77</td>
<td align="right">76</td>
<td align="left">Gram-negative (511-511)</td>
<td align="right">60</td>
<td align="right">75</td>
<td align="right">73</td>
</tr>
<tr class="even">
<td align="left">Cardial</td>
<td align="left">Gram-positive (366-366)</td>
<td align="right">61</td>
<td align="right">78</td>
<td align="right">74</td>
<td align="left">Gram-positive (375-375)</td>
<td align="right">66</td>
<td align="right">79</td>
<td align="right">77</td>
</tr>
<tr class="odd">
<td align="left">Respiratory</td>
<td align="left">Gram-positive (332-332)</td>
<td align="right">64</td>
<td align="right">77</td>
<td align="right">74</td>
<td align="left">Gram-positive (350-350)</td>
<td align="right">60</td>
<td align="right">75</td>
<td align="right">73</td>
</tr>
<tr class="even">
<td align="left">Rheumatic</td>
<td align="left">Gram-positive (362-362)</td>
<td align="right">68</td>
<td align="right">77</td>
<td align="left">Gram-positive (335-335)</td>
<td align="right">67</td>
<td align="right">78</td>
<td align="right">76</td>
</tr>
</tbody>
</table>