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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9008</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9009</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -193,42 +193,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.01 0.025 0.005 1 0.5 0.25 0.25 <=0.001 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] <=0.001 0.025 0.005 8 32 >=128 16 4 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 4 0.5 2 2 16 <=0.001 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 2 4 2 4 16 0.5 0.001 16 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.0625 0.0625 0.125 >=256 0.5 0.005 0.5 >=256 0.025 0.001 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.0625 0.002 2 0.5 0.025 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 45 30 36 15 21 12 49 24 19 17 31 44 41 45 36 11 27 9 48 42 42 24 41 23 13</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 46 36 11 43 15 43 50 18 49 26 42 50 39 48 44 34 44 46 6 40 40 45 13 39</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I R S S S I S S S R I S S I S S R R I R S I I S R</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I S S R I I I R R I I I I R I I S R R I R R S S I</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 0.01 0.01 0.002 8 0.125 0.001 0.025 1 0.001 1 0.001</span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 2 32 0.5 0.005 1 2 0.125 2 4 0.25 0.005 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 0.5 1 32 0.25 >=128 1 8 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] <=0.001 <=0.001 0.01 0.5 0.002 0.025 1 0.125 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 1 0.01 0.01 0.0625 <=0.001 0.005 16 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 2 0.5 1 0.5 16 1 32 8 0.5 16 0.5 1 32 64 32 8 1 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [20] 64 8 32 16 32 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 1 >=16 >=16 4 0.5 1 8 0.5 8 8 4 8 8 >=16</span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 8 >=16 1 4 >=16 4 >=16 4 1 8 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 0.5 4 2 4 4 >=16 4 2 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] >=16 0.5 4 >=16 0.0625 0.125 0.25 8 0.25 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 2 0.25 2 2 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 0.25 1 8 0.125 2 2 2 4 1 1 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 4 2 0.25 0.25 8 4 8 0.125 2 8 8 0.125</span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 2 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 24 18 17 31 47 37 24 43 10 22 43 32 37 33 26 11 19 38 43 43 41 47 34 48 11</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 26 40 25 44 10 49 50 46 38 23 11 48 45 11 25 29 47 50 46 8 47 31 40 48 42</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 16 15 15 16 12 11 16 12 17 12 16 17 11 16 11 11 15 16 16 14 16 16 12 14</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 16 13 14 11 11 15 14 11 16 11 16 17 15 17 13 16 17 17 14 11 15 14 16 13</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 18 23 23 17 15 15 22 19 18 20 16 27 27 20 25 15 26 17 23 24 19 16 16 22 23</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 18 27 27 15 16 18 18 22 17 27 25 20 23 22 22 25 16 20 18 16 16 22 19 18 24</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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