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(v2.1.1.9071) update veterinary SIR interpretation, add only_fungi

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dr. M.S. (Matthijs) Berends
2024-09-19 11:44:56 +02:00
parent 573c0346ed
commit ddb23b6e73
52 changed files with 290 additions and 162 deletions
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22
R/guess_ab_col.R
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@ -274,16 +274,18 @@ get_column_abx <- function(x,
}
if (names(out[i]) %in% names(duplicates)) {
already_set_as <- out[unname(out) == unname(out[i])][1L]
warning_(
paste0(
"Column '", font_bold(out[i]), "' will not be used for ",
names(out)[i], " (", ab_name(names(out)[i], tolower = TRUE, language = NULL), ")",
", as it is already set for ",
names(already_set_as), " (", ab_name(names(already_set_as), tolower = TRUE, language = NULL), ")"
),
add_fn = font_red,
immediate = verbose
)
if (names(out)[i] != names(already_set_as)) {
warning_(
paste0(
"Column '", font_bold(out[i]), "' will not be used for ",
names(out)[i], " (", ab_name(names(out)[i], tolower = TRUE, language = NULL), ")",
", as it is already set for ",
names(already_set_as), " (", ab_name(names(already_set_as), tolower = TRUE, language = NULL), ")"
),
add_fn = font_red,
immediate = verbose
)
}
}
}
}