(v1.5.0.9028) Updated taxonomy until March 2021

docs/reference/plot.html

@@ -82,7 +82,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">AMR (for R)</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.5.0.9027</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.5.0.9028</span>
       </span>
     </div>
 
@@ -252,6 +252,7 @@
   ab <span class='op'>=</span> <span class='cn'>NULL</span>,
   guideline <span class='op'>=</span> <span class='st'>"EUCAST"</span>,
   colours_RSI <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span><span class='op'>(</span><span class='st'>"#ED553B"</span>, <span class='st'>"#3CAEA3"</span>, <span class='st'>"#F6D55C"</span><span class='op'>)</span>,
+  language <span class='op'>=</span> <span class='fu'><a href='translate.html'>get_locale</a></span><span class='op'>(</span><span class='op'>)</span>,
   expand <span class='op'>=</span> <span class='cn'>TRUE</span>,
   <span class='va'>...</span>
 <span class='op'>)</span>
@@ -267,6 +268,7 @@
   ab <span class='op'>=</span> <span class='cn'>NULL</span>,
   guideline <span class='op'>=</span> <span class='st'>"EUCAST"</span>,
   colours_RSI <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span><span class='op'>(</span><span class='st'>"#ED553B"</span>, <span class='st'>"#3CAEA3"</span>, <span class='st'>"#F6D55C"</span><span class='op'>)</span>,
+  language <span class='op'>=</span> <span class='fu'><a href='translate.html'>get_locale</a></span><span class='op'>(</span><span class='op'>)</span>,
   expand <span class='op'>=</span> <span class='cn'>TRUE</span>,
   <span class='va'>...</span>
 <span class='op'>)</span>
@@ -281,6 +283,7 @@
   ab <span class='op'>=</span> <span class='cn'>NULL</span>,
   guideline <span class='op'>=</span> <span class='st'>"EUCAST"</span>,
   colours_RSI <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span><span class='op'>(</span><span class='st'>"#ED553B"</span>, <span class='st'>"#3CAEA3"</span>, <span class='st'>"#F6D55C"</span><span class='op'>)</span>,
+  language <span class='op'>=</span> <span class='fu'><a href='translate.html'>get_locale</a></span><span class='op'>(</span><span class='op'>)</span>,
   expand <span class='op'>=</span> <span class='cn'>TRUE</span>,
   <span class='va'>...</span>
 <span class='op'>)</span>
@@ -296,6 +299,7 @@
   ab <span class='op'>=</span> <span class='cn'>NULL</span>,
   guideline <span class='op'>=</span> <span class='st'>"EUCAST"</span>,
   colours_RSI <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span><span class='op'>(</span><span class='st'>"#ED553B"</span>, <span class='st'>"#3CAEA3"</span>, <span class='st'>"#F6D55C"</span><span class='op'>)</span>,
+  language <span class='op'>=</span> <span class='fu'><a href='translate.html'>get_locale</a></span><span class='op'>(</span><span class='op'>)</span>,
   expand <span class='op'>=</span> <span class='cn'>TRUE</span>,
   <span class='va'>...</span>
 <span class='op'>)</span>
@@ -351,6 +355,10 @@
       <th>colours_RSI</th>
       <td><p>colours to use for filling in the bars, must be a vector of three values (in the order R, S and I). The default colours are colour-blind friendly.</p></td>
     </tr>
+    <tr>
+      <th>language</th>
+      <td><p>language to be used to translate 'Susceptible', 'Increased exposure'/'Intermediate' and 'Resistant', defaults to system language (see <code><a href='translate.html'>get_locale()</a></code>) and can be overwritten by setting the option <code>AMR_locale</code>, e.g. <code><a href='https://rdrr.io/r/base/options.html'>options(AMR_locale = "de")</a></code>, see <a href='translate.html'>translate</a>. Use <code>language = NULL</code> or <code>language = ""</code> to prevent translation.</p></td>
+    </tr>
     <tr>
       <th>expand</th>
       <td><p>logical to indicate whether the range on the x axis should be expanded between the lowest and highest value. For MIC values, intermediate values will be factors of 2 starting from the highest MIC value. For disk diameters, the whole diameter range will be filled.</p></td>