From de0f7b8950a93bb6092c5f8e8e2402400c502521 Mon Sep 17 00:00:00 2001 From: "Matthijs S. Berends" Date: Wed, 29 Jul 2020 12:47:58 +0200 Subject: [PATCH] (v1.2.0.9040) conserve_capped_values for as.rsi() --- DESCRIPTION | 2 +- NEWS.md | 2 +- R/rsi.R | 1 - docs/404.html | 2 +- docs/LICENSE-text.html | 2 +- docs/articles/index.html | 2 +- docs/authors.html | 2 +- docs/extra.js | 1 + docs/index.html | 2 +- docs/news/index.html | 8 ++++---- docs/pkgdown.yml | 2 +- docs/reference/as.rsi.html | 3 +-- docs/reference/index.html | 2 +- docs/survey.html | 2 +- man/as.rsi.Rd | 1 - pkgdown/extra.js | 1 + 16 files changed, 17 insertions(+), 18 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index e8644e0a..8b342075 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: AMR -Version: 1.2.0.9039 +Version: 1.2.0.9040 Date: 2020-07-29 Title: Antimicrobial Resistance Analysis Authors@R: c( diff --git a/NEWS.md b/NEWS.md index a8da8405..b281a667 100755 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# AMR 1.2.0.9039 +# AMR 1.2.0.9040 ## Last updated: 29 July 2020 ### New diff --git a/R/rsi.R b/R/rsi.R index 52f527fa..ee2eae43 100755 --- a/R/rsi.R +++ b/R/rsi.R @@ -261,7 +261,6 @@ as.rsi.disk <- function(x, ab = deparse(substitute(x)), guideline = "EUCAST", uti = FALSE, - conserve_capped_values = FALSE, ...) { stop_if(missing(mo), 'No information was supplied about the microorganisms (missing parameter "mo"). See ?as.rsi.\n\n', diff --git a/docs/404.html b/docs/404.html index 08e2e268..a01823d6 100644 --- a/docs/404.html +++ b/docs/404.html @@ -81,7 +81,7 @@ AMR (for R) - 1.2.0.9039 + 1.2.0.9040 diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html index ad64af63..8f349004 100644 --- a/docs/LICENSE-text.html +++ b/docs/LICENSE-text.html @@ -81,7 +81,7 @@ AMR (for R) - 1.2.0.9039 + 1.2.0.9040 diff --git a/docs/articles/index.html b/docs/articles/index.html index becb8cde..fbf6f69c 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -81,7 +81,7 @@ AMR (for R) - 1.2.0.9039 + 1.2.0.9040 diff --git a/docs/authors.html b/docs/authors.html index d721c1ae..76e206fa 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -81,7 +81,7 @@ AMR (for R) - 1.2.0.9039 + 1.2.0.9040 diff --git a/docs/extra.js b/docs/extra.js index c1268b17..202cd432 100644 --- a/docs/extra.js +++ b/docs/extra.js @@ -93,6 +93,7 @@ $(document).ready(function() { $('.template-citation-authors h1').eq(0).text('How to cite'); $('.template-citation-authors h1').eq(1).text('All contributors'); $(".developers").html(doct_tit($(".developers").html())); + $(".developers a[href='authors.html']").text("All contributors..."); // Edit title of manual $('.template-reference-index h1').text('Manual'); diff --git a/docs/index.html b/docs/index.html index c9fbbf1a..046ad2e1 100644 --- a/docs/index.html +++ b/docs/index.html @@ -43,7 +43,7 @@ AMR (for R) - 1.2.0.9039 + 1.2.0.9040 diff --git a/docs/news/index.html b/docs/news/index.html index 96c24db3..c30008ae 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -81,7 +81,7 @@ AMR (for R) - 1.2.0.9039 + 1.2.0.9040 @@ -229,9 +229,9 @@ Source: NEWS.md -
-

-AMR 1.2.0.9039 Unreleased +
+

+AMR 1.2.0.9040 Unreleased

diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 642982ed..3a612742 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -10,7 +10,7 @@ articles: WHONET: WHONET.html benchmarks: benchmarks.html resistance_predict: resistance_predict.html -last_built: 2020-07-29T09:46Z +last_built: 2020-07-29T10:44Z urls: reference: https://msberends.github.io/AMR/reference article: https://msberends.github.io/AMR/articles diff --git a/docs/reference/as.rsi.html b/docs/reference/as.rsi.html index 4f28a991..a6b94feb 100644 --- a/docs/reference/as.rsi.html +++ b/docs/reference/as.rsi.html @@ -82,7 +82,7 @@ AMR (for R) - 1.2.0.9039 + 1.2.0.9040

@@ -255,7 +255,6 @@ ab = deparse(substitute(x)), guideline = "EUCAST", uti = FALSE, - conserve_capped_values = FALSE, ... ) diff --git a/docs/reference/index.html b/docs/reference/index.html index 42e3fbef..846a848d 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -81,7 +81,7 @@ AMR (for R) - 1.2.0.9039 + 1.2.0.9040
diff --git a/docs/survey.html b/docs/survey.html index d4288f74..b4939ae6 100644 --- a/docs/survey.html +++ b/docs/survey.html @@ -81,7 +81,7 @@ AMR (for R) - 1.2.0.9039 + 1.2.0.9040

diff --git a/man/as.rsi.Rd b/man/as.rsi.Rd index 569901e6..41d310c7 100755 --- a/man/as.rsi.Rd +++ b/man/as.rsi.Rd @@ -28,7 +28,6 @@ as.rsi(x, ...) ab = deparse(substitute(x)), guideline = "EUCAST", uti = FALSE, - conserve_capped_values = FALSE, ... ) diff --git a/pkgdown/extra.js b/pkgdown/extra.js index c1268b17..202cd432 100644 --- a/pkgdown/extra.js +++ b/pkgdown/extra.js @@ -93,6 +93,7 @@ $(document).ready(function() { $('.template-citation-authors h1').eq(0).text('How to cite'); $('.template-citation-authors h1').eq(1).text('All contributors'); $(".developers").html(doct_tit($(".developers").html())); + $(".developers a[href='authors.html']").text("All contributors..."); // Edit title of manual $('.template-reference-index h1').text('Manual');