P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-09 04:42:22 +02:00
Code Releases Activity

fix for empty values in mo_property

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2018-09-05 12:21:27 +02:00
parent e39a9a8b05
commit de36b0be23
4 changed files with 39 additions and 28 deletions
Download Patch File Download Diff File Expand all files Collapse all files

21
man/mo_property.Rd
View File

@ -54,6 +54,9 @@ mo_aerobic(x)
\item{language}{language of the returned text, either one of \code{"en"} (English), \code{"de"} (German) or \code{"nl"} (Dutch)}
}
\value{
Character or logical (only \code{mo_aerobic})
}
\description{
Use these functions to return a specific property of a microorganism from the \code{\link{microorganisms}} data set. All input values will be evaluated internally with \code{\link{as.mo}}.
}
@ -62,7 +65,7 @@ Use these functions to return a specific property of a microorganism from the \c
mo_family("E. coli") # "Enterobacteriaceae"
mo_genus("E. coli") # "Escherichia"
mo_species("E. coli") # "coli"
mo_subspecies("E. coli") # <NA>
mo_subspecies("E. coli") # ""
mo_fullname("E. coli") # "Escherichia coli"
mo_shortname("E. coli") # "E. coli"
mo_type("E. coli") # "Bacteria"
@ -110,16 +113,16 @@ mo_aerobic("B. fragilis") # FALSE
# Becker classification, see ?as.mo
mo_fullname("S. epidermidis") # "Staphylococcus epidermidis"
mo_fullname("S. epidermidis", Becker = TRUE) # "Coagulase Negative Staphylococcus (CoNS)"
mo_shortname("S. epidermidis") # "S. epidermidis"
mo_shortname("S. epidermidis", Becker = TRUE) # "CoNS"
mo_fullname("S. epi") # "Staphylococcus epidermidis"
mo_fullname("S. epi", Becker = TRUE) # "Coagulase Negative Staphylococcus (CoNS)"
mo_shortname("S. epi") # "S. epidermidis"
mo_shortname("S. epi", Becker = TRUE) # "CoNS"
# Lancefield classification, see ?as.mo
mo_fullname("S. pyogenes") # "Streptococcus pyogenes"
mo_fullname("S. pyogenes", Lancefield = TRUE) # "Streptococcus group A"
mo_shortname("S. pyogenes") # "S. pyogenes"
mo_shortname("S. pyogenes", Lancefield = TRUE) # "GAS"
mo_fullname("S. pyo") # "Streptococcus pyogenes"
mo_fullname("S. pyo", Lancefield = TRUE) # "Streptococcus group A"
mo_shortname("S. pyo") # "S. pyogenes"
mo_shortname("S. pyo", Lancefield = TRUE) # "GAS"
}
\seealso{
\code{\link{microorganisms}}